Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC013267.1-201ENST00000458227 267 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC010468.1-201ENST00000461022 817 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC116337.2-201ENST00000477662 156 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNU6-927P-201ENST00000516199 100 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNU6-1003P-201ENST00000517099 105 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 RNU6-1231P-201ENST00000517185 103 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 MTND4LP18-201ENST00000526864 291 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC110760.3-201ENST00000598794 467 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AP000403.1-201ENST00000603349 851 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL022161.1-201ENST00000604390 213 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC107294.3-201ENST00000609211 526 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC245517.5-201ENST00000611529 162 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC073114.1-201ENST00000612027 490 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 MIR6817-201ENST00000615588 66 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AL136313.1-201ENST00000624804 202 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC243829.7-201ENST00000633081 225 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC093591.3-201ENST00000634516 308 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 AC110079.1-202ENST00000635213 138 ntBASIC2.76□□□□□ -1.97
TNFRSF4P43489 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
TNFRSF4P43489 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.76□□□□□ -1.97
TNFRSF4P43489 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 RNU1-105P-201ENST00000363470 161 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 U3.12-201ENST00000364498 214 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 RNA5SP354-201ENST00000391247 136 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 RNA5SP508-201ENST00000411327 119 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 BTF3L4P3-201ENST00000418879 476 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 TIMM9P1-201ENST00000436122 256 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 RPL22P17-201ENST00000438729 315 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC118469.1-201ENST00000442943 488 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 HMGB3P8-201ENST00000449709 577 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 RPL37P6-201ENST00000460682 294 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC109486.1-201ENST00000486833 374 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 RNA5SP290-201ENST00000517133 127 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC060788.1-201ENST00000521318 469 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AP002770.2-201ENST00000543613 532 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC136601.2-201ENST00000604356 474 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC239868.4-201ENST00000608318 671 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC012360.2-201ENST00000609349 391 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC107294.1-201ENST00000609524 467 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 AC048344.4-201ENST00000619744 527 ntBASIC2.75□□□□□ -1.97
TNFRSF4P43489 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
TNFRSF4P43489 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.75□□□□□ -1.97
TNFRSF4P43489 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
TNFRSF4P43489 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
TNFRSF4P43489 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPL21P3-201ENST00000395517 478 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPS20P2-201ENST00000402520 389 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 SETP8-201ENST00000435341 628 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPL23AP58-201ENST00000440453 469 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 GDI2P2-201ENST00000445131 608 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPS3P1-201ENST00000456781 192 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPL21P41-201ENST00000459863 264 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC146507.2-201ENST00000460608 476 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 RPL7P5-201ENST00000471472 736 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC117522.2-201ENST00000510049 657 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 RN7SKP258-201ENST00000517151 304 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC025881.1-201ENST00000518851 512 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AC068657.1-201ENST00000520807 306 ntBASIC2.74□□□□□ -1.97
TNFRSF4P43489 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms