Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL773545.4-201ENST00000637262 310 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AL513478.4-201ENST00000641636 310 ntBASIC3.99□□□□□ -1.77
MSX2P35548 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX2P35548 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
MSX2P35548 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.98□□□□□ -1.77
MSX2P35548 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 Y_RNA.153-201ENST00000363615 91 ntBASIC3.98□□□□□ -1.77
MSX2P35548 SET-203ENST00000372688 801 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 RNU6-629P-201ENST00000384061 103 ntBASIC3.98□□□□□ -1.77
MSX2P35548 Y_RNA.645-201ENST00000391229 102 ntBASIC3.98□□□□□ -1.77
MSX2P35548 MIR1302-3-201ENST00000408128 138 ntBASIC3.98□□□□□ -1.77
MSX2P35548 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC092809.3-201ENST00000415453 231 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 AC008267.5-201ENST00000424928 265 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC096644.2-201ENST00000429278 159 ntBASIC3.98□□□□□ -1.77
MSX2P35548 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.98□□□□□ -1.77
MSX2P35548 CYCSP43-201ENST00000438233 310 ntBASIC3.98□□□□□ -1.77
MSX2P35548 RPS29P33-201ENST00000456717 146 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.98□□□□□ -1.77
MSX2P35548 OR7H2P-201ENST00000513483 306 ntBASIC3.98□□□□□ -1.77
MSX2P35548 RNU6-470P-201ENST00000515954 104 ntBASIC3.98□□□□□ -1.77
MSX2P35548 RNU1-54P-201ENST00000517181 120 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.98□□□□□ -1.77
MSX2P35548 OR8R1P-201ENST00000543943 764 ntBASIC3.98□□□□□ -1.77
MSX2P35548 EDDM3DP-201ENST00000554692 434 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC113195.1-201ENST00000579952 141 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC104695.3-201ENST00000604052 296 ntBASIC3.98□□□□□ -1.77
MSX2P35548 NUTF2P8-201ENST00000604593 363 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC007619.2-201ENST00000605743 379 ntBASIC3.98□□□□□ -1.77
MSX2P35548 MIR7702-201ENST00000621931 59 ntBASIC3.98□□□□□ -1.77
MSX2P35548 AC243312.2-201ENST00000623340 601 ntBASIC3.98□□□□□ -1.77
MSX2P35548 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
MSX2P35548 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
MSX2P35548 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
MSX2P35548 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
MSX2P35548 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSX2P35548 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSX2P35548 AC008725.1-201ENST00000605123 2263 ntBASIC3.97□□□□□ -1.77
MSX2P35548 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
MSX2P35548 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.97□□□□□ -1.77
MSX2P35548 Y_RNA.176-201ENST00000363815 109 ntBASIC3.97□□□□□ -1.77
MSX2P35548 Y_RNA.188-201ENST00000363952 111 ntBASIC3.97□□□□□ -1.77
MSX2P35548 RNU6-335P-201ENST00000364563 113 ntBASIC3.97□□□□□ -1.77
MSX2P35548 Y_RNA.455-201ENST00000384230 98 ntBASIC3.97□□□□□ -1.77
MSX2P35548 SNORD3H-201ENST00000384486 214 ntBASIC3.97□□□□□ -1.77
MSX2P35548 RNU1-89P-201ENST00000384592 164 ntBASIC3.97□□□□□ -1.77
MSX2P35548 EI24P1-201ENST00000416584 867 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.97□□□□□ -1.77
MSX2P35548 AC093151.1-201ENST00000427711 313 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AL591704.1-201ENST00000432574 275 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AL356535.1-201ENST00000440335 398 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX2P35548 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX2P35548 FTH1P2-201ENST00000466086 412 ntBASIC3.97□□□□□ -1.77
MSX2P35548 RPL21P126-201ENST00000470049 478 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AC015911.1-201ENST00000495111 156 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AC026801.2-201ENST00000515352 425 ntBASIC3.97□□□□□ -1.77
MSX2P35548 Y_RNA.689-201ENST00000516589 107 ntBASIC3.97□□□□□ -1.77
MSX2P35548 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSX2P35548 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX2P35548 RNU6-323P-201ENST00000521915 107 ntBASIC3.97□□□□□ -1.77
MSX2P35548 CYCSP27-201ENST00000527643 293 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AP002404.1-201ENST00000532005 451 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX2P35548 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.97□□□□□ -1.77
MSX2P35548 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.97□□□□□ -1.77
MSX2P35548 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.97□□□□□ -1.77
MSX2P35548 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX2P35548 AC012669.1-201ENST00000603209 283 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AC174048.1-201ENST00000603389 144 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AL158032.1-201ENST00000605401 106 ntBASIC3.97□□□□□ -1.77
MSX2P35548 PRR13P7-201ENST00000605538 430 ntBASIC3.97□□□□□ -1.77
MSX2P35548 AC103858.2-201ENST00000621471 543 ntBASIC3.97□□□□□ -1.77
MSX2P35548 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.97□□□□□ -1.77
MSX2P35548 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSX2P35548 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX2P35548 AC006504.1-201ENST00000562493 3666 ntBASIC3.97□□□□□ -1.77
MSX2P35548 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
MSX2P35548 LINC02471-203ENST00000641941 4752 ntBASIC3.97□□□□□ -1.77
MSX2P35548 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
MSX2P35548 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.96□□□□□ -1.78
MSX2P35548 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSX2P35548 RNU6-490P-201ENST00000362985 107 ntBASIC3.96□□□□□ -1.78
MSX2P35548 RNA5SP322-201ENST00000363617 119 ntBASIC3.96□□□□□ -1.78
MSX2P35548 SNORA23-201ENST00000365128 182 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms