Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SCARNA24.1-201ENST00000516465 137 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 SNORA70.18-201ENST00000516696 98 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC4.13□□□□□ -1.75
HMGB1P09429 AC087883.1-201ENST00000551882 391 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.13□□□□□ -1.75
HMGB1P09429 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HMGB1P09429 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.13□□□□□ -1.75
HMGB1P09429 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC4.13□□□□□ -1.75
HMGB1P09429 MIR4765-201ENST00000585007 77 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 DEFB131E-202ENST00000602581 683 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 AC073114.1-201ENST00000612027 490 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 CU459211.1-201ENST00000635667 749 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HMGB1P09429 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HMGB1P09429 CKAP2P1-201ENST00000555477 2049 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HMGB1P09429 OR5J1P-201ENST00000313544 939 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HMGB1P09429 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 AL359837.1-201ENST00000381357 287 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 RAB9AP3-201ENST00000412737 573 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 SYF2P2-201ENST00000417620 583 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 DBIP2-201ENST00000419076 262 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC4.12□□□□□ -1.75
HMGB1P09429 MTATP6P17-201ENST00000431030 672 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 FABP5P14-201ENST00000437273 393 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.12□□□□□ -1.75
HMGB1P09429 AC104389.3-201ENST00000445629 235 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 RAB9AP1-201ENST00000449393 573 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 RPS27AP8-201ENST00000452665 445 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.12□□□□□ -1.75
HMGB1P09429 AL441985.1-201ENST00000457727 251 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 RNA5SP269-201ENST00000459032 137 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 FAM92A1P2-202ENST00000504766 877 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC116655.1-201ENST00000508324 901 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 AC119751.5-201ENST00000514077 770 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 RNA5SP380-201ENST00000517190 98 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 AC103843.2-201ENST00000530523 682 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 MIR4506-201ENST00000584693 77 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.12□□□□□ -1.75
HMGB1P09429 Z94722.1-201ENST00000604328 474 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC090578.1-201ENST00000604955 591 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AL109618.2-201ENST00000605527 211 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AL592295.2-201ENST00000612578 206 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 U4.6-201ENST00000621618 127 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 AC009093.8-201ENST00000641769 292 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 MTND4P27-201ENST00000450813 1354 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HMGB1P09429 AC010329.5-201ENST00000623497 2174 ntBASIC4.12□□□□□ -1.75
HMGB1P09429 RNU6-169P-201ENST00000365336 107 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 SNORA40C-201ENST00000391285 128 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 RPS7P13-201ENST00000413955 498 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.11□□□□□ -1.75
HMGB1P09429 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.11□□□□□ -1.75
HMGB1P09429 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.11□□□□□ -1.75
HMGB1P09429 AL133547.1-201ENST00000448546 220 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AP001324.2-201ENST00000461163 319 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AC106707.2-201ENST00000484182 374 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AC023194.1-201ENST00000493084 308 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC4.11□□□□□ -1.75
HMGB1P09429 AC091965.2-201ENST00000512324 613 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 SNORA18.6-201ENST00000516792 115 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 OR5BN1P-201ENST00000532955 829 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.11□□□□□ -1.75
HMGB1P09429 AL670379.4-201ENST00000605279 254 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 RPL23AP88-201ENST00000605759 454 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AL121992.2-201ENST00000606262 256 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 MIR98-201ENST00000606724 119 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 MIR6134-201ENST00000617606 109 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 AC097520.1-201ENST00000624435 385 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HMGB1P09429 AC032011.1-201ENST00000611703 1549 ntBASIC4.11□□□□□ -1.75
HMGB1P09429 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.1□□□□□ -1.75
HMGB1P09429 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
HMGB1P09429 FARSBP1-201ENST00000435808 1778 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HMGB1P09429 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HMGB1P09429 Y_RNA.22-201ENST00000362492 102 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 RNA5SP124-201ENST00000362739 110 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 Y_RNA.201-201ENST00000364052 96 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 UBE2V1P2-201ENST00000397758 440 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC018644.1-201ENST00000429934 551 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.1□□□□□ -1.75
HMGB1P09429 RBMY2UP-201ENST00000453474 324 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC4.1□□□□□ -1.75
HMGB1P09429 AL583843.1-201ENST00000456070 346 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC090096.1-201ENST00000489168 390 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 RNA5SP385-201ENST00000515947 110 ntBASIC4.1□□□□□ -1.75
HMGB1P09429 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC4.1□□□□□ -1.75
HMGB1P09429 AC007536.1-201ENST00000533382 349 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms