Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 HMGN2P30-201ENST00000423237 256 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 ISCA1P1-201ENST00000426679 387 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 AL358934.1-201ENST00000432346 324 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 RPS20P5-201ENST00000434808 360 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC006028.1-201ENST00000438379 402 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC079448.1-201ENST00000449377 373 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC11O43248 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 C1DP4-201ENST00000455429 424 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC022364.2-201ENST00000457963 554 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC091179.1-201ENST00000461606 579 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC11O43248 AP002884.2-201ENST00000471647 395 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 RPS3AP17-201ENST00000472594 777 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC126389.1-201ENST00000477436 290 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC233702.1-201ENST00000482905 502 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC023194.1-201ENST00000493084 308 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 RN7SL504P-201ENST00000494496 287 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC105252.1-201ENST00000503089 286 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC11O43248 AC108078.2-201ENST00000510750 236 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC11O43248 Y_RNA.689-201ENST00000516589 107 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 SNORA70.19-201ENST00000516717 90 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 SNORA31.21-201ENST00000517180 77 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.44□□□□□ -1.86
HOXC11O43248 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC11O43248 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXC11O43248 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXC11O43248 NUTF2P8-201ENST00000604593 363 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 Z84480.1-201ENST00000605131 311 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC022893.3-201ENST00000607665 437 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC104073.3-201ENST00000610942 955 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC130324.3-201ENST00000614165 542 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AL359547.2-201ENST00000615810 418 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC138649.3-201ENST00000622154 254 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AC068880.5-201ENST00000624331 290 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC11O43248 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 AC073073.2-201ENST00000609827 2578 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXC11O43248 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 MTND5P7-201ENST00000413558 1798 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-181P-201ENST00000363225 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-179P-201ENST00000363350 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-799P-201ENST00000363567 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-884P-201ENST00000363889 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 CD24P4-201ENST00000382840 243 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 OR5H15-201ENST00000383696 930 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-1027P-201ENST00000383998 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 MIR301A-201ENST00000385261 86 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 NDUFB4P4-201ENST00000404822 243 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 AC080125.1-201ENST00000414888 684 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AC114491.1-201ENST00000416095 246 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 AL592045.1-201ENST00000429867 352 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 FABP5P15-201ENST00000453566 214 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RPL26P9-201ENST00000457466 433 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 AC116562.3-201ENST00000506136 177 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXC11O43248 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-405P-201ENST00000516637 110 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 RNU6-445P-201ENST00000516949 107 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXC11O43248 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 AP003072.2-201ENST00000527756 676 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AC068587.5-201ENST00000528506 175 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 ADI1P3-201ENST00000549509 470 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXC11O43248 MTND1P15-201ENST00000579262 949 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AL158032.1-201ENST00000605401 106 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 AL512643.1-201ENST00000635735 524 ntBASIC3.43□□□□□ -1.86
HOXC11O43248 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXC11O43248 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXC11O43248 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
HOXC11O43248 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 SRP72P2-201ENST00000344851 1979 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXC11O43248 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXC11O43248 Y_RNA.22-201ENST00000362492 102 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms