Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 USP9YP30-201ENST00000430729 455 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC116533.1-201ENST00000459748 321 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 DYNLL1P5-201ENST00000467158 270 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC108860.1-201ENST00000484521 383 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AP002812.1-201ENST00000495378 474 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 CEACAMP10-202ENST00000495431 496 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 SNORA25.11-201ENST00000515935 105 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 RNU6-307P-201ENST00000516743 106 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC005899.2-201ENST00000584353 90 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC000123.2-201ENST00000623124 461 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AC008785.1-201ENST00000624475 456 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 BDP1P-201ENST00000582658 1990 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 AL138713.1-201ENST00000624026 2130 ntBASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC39Q9UFE4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 FAM35DP-201ENST00000323387 2712 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNA5SP258-201ENST00000362750 119 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNU6-280P-201ENST00000364145 104 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNU6-338P-201ENST00000383888 105 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1293P-201ENST00000384077 107 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.464-201ENST00000384282 110 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 PCNPP3-201ENST00000393579 471 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AL590139.1-201ENST00000416267 400 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 CHEK2P4-201ENST00000450340 246 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1332P-201ENST00000516666 104 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 LSM6P2-201ENST00000552208 177 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AC090115.3-201ENST00000553218 849 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AL161713.1-201ENST00000555538 145 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 MIR5188-201ENST00000583467 113 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 RNU6-156P-201ENST00000621869 107 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AC127459.3-201ENST00000624328 466 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 MIR4272-201ENST00000635924 64 ntBASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC39Q9UFE4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RAD17P1-201ENST00000418130 2042 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 PABPC1P7-201ENST00000413177 1513 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.314-201ENST00000365114 102 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 Y_RNA.416-201ENST00000384014 113 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RNU6-190P-201ENST00000384154 102 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RNU6-125P-201ENST00000384505 107 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RNU6-95P-201ENST00000384697 107 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RNU6-550P-201ENST00000391057 101 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 SAR1AP2-201ENST00000392696 594 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AL445189.1-201ENST00000405722 338 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 MIR1911-201ENST00000410783 80 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC096664.2-201ENST00000411843 406 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC119751.6-201ENST00000416712 186 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RAC1P7-201ENST00000445367 377 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC013470.1-201ENST00000453438 462 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC007967.1-201ENST00000455422 1159 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RPL9P32-201ENST00000464118 620 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RPL21P126-201ENST00000470049 478 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AL592156.1-201ENST00000508758 304 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 SNORA40.14-201ENST00000516543 86 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RNU6-1069P-201ENST00000516612 133 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC091516.1-201ENST00000549191 703 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 SUB1P3-201ENST00000564581 315 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 MIR4458-201ENST00000578872 75 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 COX6CP3-201ENST00000580869 223 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 MIR3941-201ENST00000582572 103 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC067852.4-201ENST00000590314 478 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC025946.2-201ENST00000603398 234 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AC079587.1-201ENST00000603846 277 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 RAC1P9-201ENST00000604990 392 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 CYP3A51P-201ENST00000633513 256 ntBASIC4.94□□□□□ -1.62
CCDC39Q9UFE4 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 226.5 ms