Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU5F-7P-201ENST00000363696 115 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RNU6-7-201ENST00000364784 107 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RNU6-8-201ENST00000365467 107 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 Y_RNA.608-201ENST00000410647 95 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RNU4-47P-201ENST00000410876 114 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 HMGN2P35-201ENST00000412164 270 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ZNF90P2-204ENST00000419323 1075 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC006366.1-201ENST00000422002 759 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC092447.3-201ENST00000426027 686 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 FCF1P1-201ENST00000432690 571 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC093156.1-201ENST00000440382 670 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 MTND1P30-201ENST00000441241 901 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 Z75741.1-201ENST00000446793 314 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 EPS15P1-201ENST00000448836 336 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AP000797.1-201ENST00000478870 387 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RPS3AP43-201ENST00000479743 781 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RN7SL504P-201ENST00000494496 287 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RPPH1-2P-201ENST00000516688 293 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 RNA5SP290-201ENST00000517133 127 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC090888.1-201ENST00000561335 1141 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC135628.1-201ENST00000568867 534 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 LARP7P3-201ENST00000579888 337 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 MIR3118-1-201ENST00000581787 76 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC105129.3-201ENST00000605455 485 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 MIR622-201ENST00000638396 96 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC092104.1-201ENST00000497346 1441 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RNU6-1167P-201ENST00000363227 94 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 Y_RNA.245-201ENST00000364493 95 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 MIR627-201ENST00000384979 97 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL122016.1-201ENST00000403365 367 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 BTF3L4P3-201ENST00000418879 476 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RPL7P37-201ENST00000425095 738 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 ELOCP14-201ENST00000428070 331 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 MED14P1-201ENST00000430517 648 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RPL36AP6-201ENST00000435770 321 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 ELOCP7-201ENST00000439968 331 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 KATNBL1P6-201ENST00000453433 915 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RPL21P41-201ENST00000459863 264 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RN7SL863P-201ENST00000462370 296 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC010486.2-201ENST00000505572 483 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 SNORA31.3-201ENST00000516029 96 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 RN7SKP40-201ENST00000517211 242 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC107934.1-201ENST00000522215 217 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 ROCK1P1-201ENST00000573767 549 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 MIR5004-201ENST00000579078 107 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL451007.1-201ENST00000595491 289 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 DPPA3P3-201ENST00000603842 430 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL022161.1-201ENST00000604390 213 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AL136363.1-201ENST00000605349 337 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC092354.1-201ENST00000606057 376 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 BX664608.1-201ENST00000610519 487 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC068057.2-201ENST00000624047 895 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC068880.5-201ENST00000624331 290 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 AC110079.1-202ENST00000635213 138 ntBASIC2.72□□□□□ -1.97
DDX28Q9NUL7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
DDX28Q9NUL7 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
DDX28Q9NUL7 ASNSP3-201ENST00000451989 1306 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 MIR422A-201ENST00000362286 90 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNA5SP374-201ENST00000362939 125 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNU1-105P-201ENST00000363470 161 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNU5E-5P-201ENST00000365379 116 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 MIR888-201ENST00000401186 77 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AL139397.2-201ENST00000404529 772 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AL138885.1-201ENST00000405921 675 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 RNA5SP274-201ENST00000410484 108 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.71□□□□□ -1.98
DDX28Q9NUL7 AC236972.1-201ENST00000433225 199 ntBASIC2.71□□□□□ -1.98
DDX28Q9NUL7 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms