Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC079140.3-201ENST00000511111 550 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 RNA5SP380-201ENST00000517190 98 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 OR5G4P-201ENST00000525251 760 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC093012.1-202ENST00000549403 582 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 ARL2BPP2-201ENST00000550907 489 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 RPS3AP4-201ENST00000555161 764 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.68□□□□□ -1.98
LIME1Q9H400 MIR4474-201ENST00000579189 78 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.68□□□□□ -1.98
LIME1Q9H400 RN7SKP299-201ENST00000606679 301 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC008250.2-201ENST00000615261 205 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 AC002076.2-201ENST00000617362 122 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 PISRT1-201ENST00000626175 531 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 MAPK10-322ENST00000641485 4530 ntBASIC2.68□□□□□ -1.98
LIME1Q9H400 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
LIME1Q9H400 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LIME1Q9H400 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.67□□□□□ -1.98
LIME1Q9H400 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
LIME1Q9H400 FARSBP1-201ENST00000435808 1778 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC000403.1-201ENST00000613696 3585 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 HSPE1P11-201ENST00000339579 310 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 RNU4-82P-201ENST00000362443 140 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 RNU4-24P-201ENST00000364565 139 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 SNORD67-201ENST00000390833 111 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 RPS4XP3-201ENST00000398541 413 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 MIR1261-201ENST00000408659 82 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 RNU2-33P-201ENST00000410344 192 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 RNU2-8P-201ENST00000410727 190 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 CDK8P2-201ENST00000415020 547 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.67□□□□□ -1.98
LIME1Q9H400 MTND3P17-201ENST00000416968 344 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.67□□□□□ -1.98
LIME1Q9H400 MTCO2P34-201ENST00000421994 607 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC006366.1-201ENST00000422002 759 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL590383.1-201ENST00000428602 75 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL139132.1-201ENST00000431587 344 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 RPS12P18-201ENST00000442381 270 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 USP9YP15-201ENST00000442391 422 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL135938.1-201ENST00000443141 297 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.67□□□□□ -1.98
LIME1Q9H400 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.67□□□□□ -1.98
LIME1Q9H400 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.67□□□□□ -1.98
LIME1Q9H400 RBM43P1-201ENST00000476891 1081 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 MTND4P2-201ENST00000507767 1203 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 RNU6-927P-201ENST00000516199 100 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 AP003072.2-201ENST00000527756 676 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AP002453.2-201ENST00000533503 320 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL163153.1-201ENST00000554223 283 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.67□□□□□ -1.98
LIME1Q9H400 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.67□□□□□ -1.98
LIME1Q9H400 MIR4319-201ENST00000577285 85 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 MIR3682-201ENST00000581338 84 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC119751.7-201ENST00000600494 245 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 DUXAP4-201ENST00000603046 613 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC090578.1-201ENST00000604955 591 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AL591516.1-201ENST00000611326 274 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
LIME1Q9H400 uc_338.25-201ENST00000613756 156 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC010678.1-201ENST00000614118 713 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 AC006338.1-201ENST00000618453 749 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 SNORA50A-202ENST00000629536 136 ntBASIC2.67□□□□□ -1.98
LIME1Q9H400 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LIME1Q9H400 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AL137003.2-201ENST00000606924 2538 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIME1Q9H400 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
LIME1Q9H400 SNORA1.3-201ENST00000384676 136 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
LIME1Q9H400 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 RPS15AP12-201ENST00000419498 388 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 FCF1P1-201ENST00000432690 571 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 MTCO3P5-201ENST00000433620 714 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 BNIP3P2-201ENST00000441221 577 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AL590664.1-201ENST00000448065 339 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AC013267.1-201ENST00000458227 267 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.66□□□□□ -1.98
LIME1Q9H400 NDUFB4P2-201ENST00000509515 391 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.66□□□□□ -1.98
LIME1Q9H400 RNA5SP367-201ENST00000516557 118 ntBASIC2.66□□□□□ -1.98
LIME1Q9H400 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.66□□□□□ -1.98
LIME1Q9H400 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms