Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-1167P-201ENST00000363227 94 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-778P-201ENST00000363269 103 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 Y_RNA.465-201ENST00000384293 102 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RSL24D1P4-201ENST00000400938 484 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RPL7P8-201ENST00000411964 730 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL591719.1-201ENST00000444669 744 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 MRPL50P4-201ENST00000446432 475 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 ELOCP30-201ENST00000447108 299 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 RPL21P134-201ENST00000453468 483 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC080013.2-201ENST00000460866 323 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC093809.1-201ENST00000509155 340 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC004486.1-201ENST00000546846 233 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AC009094.1-201ENST00000564443 426 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 MIR5571-201ENST00000577998 113 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL353778.1-201ENST00000603149 408 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 U2.21-201ENST00000637295 81 ntBASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.61□□□□□ -1.99
ZNF540Q8NDQ6 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-462P-201ENST00000362659 105 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 SNORA44-201ENST00000384584 132 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AF228730.1-201ENST00000397972 663 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 RN7SKP266-201ENST00000410232 287 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC107081.1-201ENST00000414975 361 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC236972.1-201ENST00000433225 199 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 RPS25P9-201ENST00000435591 252 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC107083.1-201ENST00000439643 279 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AP000705.1-201ENST00000454567 350 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 ANKRD26P4-201ENST00000455755 950 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 RNU7-59P-201ENST00000459101 61 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 GZMAP1-201ENST00000503054 631 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC009812.2-201ENST00000517657 457 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC010186.2-204ENST00000537668 439 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC023050.2-201ENST00000544968 387 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC123904.3-201ENST00000547218 814 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MTND3P12-201ENST00000559068 328 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MIR3670-2-201ENST00000582974 65 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MIR3605-201ENST00000583214 100 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MIR3670-1-201ENST00000584160 65 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MIR3670-3-201ENST00000584855 65 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC015871.2-201ENST00000603605 948 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AL596327.1-201ENST00000603629 213 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC005046.1-201ENST00000608515 625 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC107294.1-201ENST00000609524 467 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 MIR3670-4-201ENST00000612260 65 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 DUSP12P1-201ENST00000612874 516 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 uc_338.14-201ENST00000613162 166 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AC245884.12-201ENST00000615364 59 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AP003485.2-201ENST00000623636 610 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 AL137790.1-201ENST00000634283 177 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 ADAM3A-203ENST00000461344 2157 ntBASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
ZNF540Q8NDQ6 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 Y_RNA.510-201ENST00000384511 114 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms