Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BOLA3P3-201ENST00000505182 232 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC103833.1-201ENST00000517442 172 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 OR4R1P-201ENST00000529879 463 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AL020997.3-201ENST00000602843 359 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC025588.4-201ENST00000615802 908 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC008121.3-201ENST00000618726 433 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC012640.5-201ENST00000623897 319 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-989P-201ENST00000362756 107 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 RNY1-201ENST00000364228 113 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 MIR548J-201ENST00000408833 112 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AL136380.1-201ENST00000447970 162 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 Z82190.1-201ENST00000454534 490 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-416P-201ENST00000516265 103 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 BTF3P12-201ENST00000519620 469 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AL731537.2-201ENST00000561565 951 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC023824.2-201ENST00000566185 400 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 MIR5571-201ENST00000577998 113 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 ZNF849P-201ENST00000594711 1566 ntBASIC1.77□□□□□ -2.13
CCDC88AQ3V6T2 RNA5SP363-201ENST00000365072 115 ntBASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AC093422.3-201ENST00000428506 305 ntBASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 RPL31P54-201ENST00000429803 370 ntBASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AC244505.5-201ENST00000443639 207 ntBASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 MTND2P41-201ENST00000637599 773 ntBASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC88AQ3V6T2 MTCO2P31-201ENST00000402702 684 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 USP9YP19-201ENST00000412165 485 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AL445183.3-201ENST00000414168 502 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 USP9YP13-201ENST00000417797 480 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC024082.2-201ENST00000434771 238 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC241584.1-201ENST00000438469 1241 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 SNRPGP13-201ENST00000442212 177 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AL929288.2-201ENST00000446368 407 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 MTND2P6-201ENST00000455337 1030 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 RPS29P29-201ENST00000456396 171 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AL359385.1-201ENST00000456509 365 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC012443.1-201ENST00000605605 231 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 HPVC1-201ENST00000629899 1198 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 Y_RNA.205-201ENST00000364128 113 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 RNA5SP354-201ENST00000391247 136 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 HMGN1P14-201ENST00000412459 517 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 Z85995.1-201ENST00000415547 335 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 OR10R1P-201ENST00000441524 1141 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 KATNBL1P3-201ENST00000443475 909 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 OSTCP8-201ENST00000445117 448 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC234775.1-201ENST00000454247 670 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC092155.2-201ENST00000454675 477 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 PABPC1P3-201ENST00000469174 459 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 SCARNA3-201ENST00000517097 143 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC139103.1-201ENST00000534696 1030 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 MTCYBP27-201ENST00000555160 670 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 MIR151B-201ENST00000584249 96 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 GAS5-AS1-201ENST00000602767 694 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC005296.1-201ENST00000616145 209 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 ZNF663P-202ENST00000641770 1131 ntBASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC88AQ3V6T2 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 CDC27P3-201ENST00000635418 1910 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 SNORD82-201ENST00000365530 70 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 RNU6-217P-201ENST00000384164 104 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 MTCO1P48-201ENST00000448024 1096 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AC078857.1-201ENST00000469870 667 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AC034222.1-201ENST00000494052 532 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AC096571.1-202ENST00000506634 735 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AC025768.1-201ENST00000510057 267 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AP002748.2-201ENST00000528671 348 ntBASIC1.74□□□□□ -2.13
CCDC88AQ3V6T2 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms