Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNA5SP167-201ENST00000365461 116 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-190P-201ENST00000384154 102 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AL592114.1-201ENST00000403842 483 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 SNORA57.3-201ENST00000411095 141 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 EEF1A1P40-201ENST00000412883 573 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 NDUFB4P7-201ENST00000423198 363 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 RPL21P66-201ENST00000426566 466 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AL591704.1-201ENST00000432574 275 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 SNORA71B-202ENST00000439232 272 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 NOTCH2P1-201ENST00000443481 624 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AL133547.1-201ENST00000448546 220 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 FABP5P13-201ENST00000452144 328 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AC007547.1-201ENST00000462177 490 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 TRBV1-201ENST00000476502 284 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-123P-201ENST00000516163 102 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.689-201ENST00000516589 107 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 TRMT10BP1-201ENST00000519377 943 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AC022695.1-201ENST00000522089 237 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AC087499.8-201ENST00000578406 226 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 C8orf59P2-201ENST00000603441 271 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 AP001330.4-201ENST00000604350 154 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 BRDTP1-201ENST00000605735 677 ntBASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AP004289.2-201ENST00000444413 1457 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 U1.1-201ENST00000384101 164 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 HMGN2P8-201ENST00000391458 268 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 RN7SKP32-201ENST00000410167 303 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC080125.1-201ENST00000414888 684 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 RPL35AP12-201ENST00000425362 338 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 MTND3P23-201ENST00000431980 347 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC093019.1-201ENST00000443135 252 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 PRDX3P3-201ENST00000447765 522 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC034236.1-201ENST00000469891 373 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-1314P-201ENST00000517139 104 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AP004242.1-201ENST00000533701 349 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 RAB11AP2-201ENST00000545905 639 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 VN1R80P-201ENST00000597126 338 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AL117336.2-201ENST00000602435 335 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC005344.1-201ENST00000613391 459 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC090617.10-201ENST00000624308 134 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 AC012442.3-202ENST00000636742 206 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 NCAPGP1-201ENST00000505112 1814 ntBASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.69□□□□□ -1.82
PTCHD3Q3KNS1 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 MTND4P35-201ENST00000604257 1375 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.142-201ENST00000363491 102 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-522P-201ENST00000364497 107 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 MIR200C-201ENST00000384980 68 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.615-201ENST00000410769 117 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 RPS12P24-201ENST00000412619 387 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AL645937.1-202ENST00000421799 937 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 RPL7P12-201ENST00000446719 750 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 MTND3P22-201ENST00000510932 243 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms