Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC093663.1-201ENST00000497190 394 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC010493.1-201ENST00000513479 292 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNU6-237P-201ENST00000515985 71 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 SCARNA24.1-201ENST00000516465 137 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNU6-1256P-201ENST00000516539 103 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNU6-445P-201ENST00000516949 107 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 RNU6-410P-201ENST00000517006 107 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AP006587.4-201ENST00000526053 529 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 ATP5F1P5-201ENST00000526403 760 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AC013553.2-201ENST00000604244 589 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 AL136363.1-201ENST00000605349 337 ntBASIC3.34□□□□□ -1.87
COL28A1Q2UY09 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
COL28A1Q2UY09 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL28A1Q2UY09 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL28A1Q2UY09 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 Y_RNA.22-201ENST00000362492 102 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RN7SKP226-201ENST00000364912 300 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 Y_RNA.296-201ENST00000364930 108 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RNU6-741P-201ENST00000383889 107 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RNU6-39P-201ENST00000384344 107 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RNU6-1197P-201ENST00000391183 107 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC017079.2-201ENST00000416102 485 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 MTND3P21-201ENST00000433774 331 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 MTND1P1-201ENST00000445453 368 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 MRPS31P2-201ENST00000451581 518 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC107401.1-201ENST00000503426 685 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RNU6-1220P-201ENST00000517126 108 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 MTCYBP20-201ENST00000524239 1129 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 OR5G4P-201ENST00000525251 760 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC245505.1-201ENST00000556398 224 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC067852.3-201ENST00000589177 561 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 KLKP1-201ENST00000595979 403 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC174048.1-201ENST00000603389 144 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AC009161.2-201ENST00000624626 138 ntBASIC3.33□□□□□ -1.88
COL28A1Q2UY09 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.33□□□□□ -1.88
COL28A1Q2UY09 AL136164.4-201ENST00000625013 2135 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AP001148.1-201ENST00000624124 2359 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 CUL1P1-201ENST00000509510 2425 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 RNA5SP295-201ENST00000362655 121 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 RNU6-282P-201ENST00000365357 103 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC022364.2-201ENST00000457963 554 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 RPL23AP62-201ENST00000463396 453 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 RPS4XP22-201ENST00000480755 780 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC007182.2-201ENST00000489251 402 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC023194.1-201ENST00000493084 308 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 HMGB1P41-201ENST00000520234 440 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC009570.1-201ENST00000609599 745 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 OR5AK4P-201ENST00000635912 903 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 AC099654.12-201ENST00000639868 649 ntBASIC3.32□□□□□ -1.88
COL28A1Q2UY09 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL28A1Q2UY09 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 Y_RNA.41-201ENST00000362646 102 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 SNORA44-201ENST00000384584 132 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 RNU6-817P-201ENST00000391083 104 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 RN7SKP53-201ENST00000411337 315 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC104651.1-201ENST00000427559 735 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms