Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 ANP32BP2-201ENST00000454525 545 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AL590639.1-201ENST00000456484 337 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 U3.44-201ENST00000458938 192 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AC009901.1-201ENST00000506703 541 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SF3A1Q15459 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AL121579.1-201ENST00000555129 305 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 MIR5684-201ENST00000585074 65 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 MIR3138-201ENST00000585238 82 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.65□□□□□ -1.67
SF3A1Q15459 HSPE1P7-201ENST00000604681 321 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.65□□□□□ -1.67
SF3A1Q15459 FTX_3.1-201ENST00000610451 147 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AC093913.1-201ENST00000614178 329 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AL591424.2-201ENST00000617023 128 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.65□□□□□ -1.67
SF3A1Q15459 U6.42-201ENST00000618440 107 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 MIR4727-201ENST00000622232 55 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AC090617.10-201ENST00000624308 134 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SF3A1Q15459 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
SF3A1Q15459 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.65□□□□□ -1.67
SF3A1Q15459 MAPK10-373ENST00000641983 6772 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SF3A1Q15459 AC066616.2-201ENST00000559334 1481 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AC018555.1-201ENST00000567548 1980 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.64□□□□□ -1.67
SF3A1Q15459 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SF3A1Q15459 RNY3P14-201ENST00000384309 102 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 RNA5SP219-201ENST00000390940 113 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 BX682237.1-201ENST00000415016 335 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AC011742.1-201ENST00000431448 434 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.64□□□□□ -1.67
SF3A1Q15459 PRPS1P1-201ENST00000445305 876 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.64□□□□□ -1.67
SF3A1Q15459 RPL23AP62-201ENST00000463396 453 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 UQCRHP4-201ENST00000471686 272 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 RN7SL271P-201ENST00000487601 295 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 Y_RNA.654-201ENST00000497848 106 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.64□□□□□ -1.67
SF3A1Q15459 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SF3A1Q15459 AC112206.3-201ENST00000514578 389 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 SNORA70.14-201ENST00000516205 110 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.64□□□□□ -1.67
SF3A1Q15459 HMGB1P14-201ENST00000557424 591 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.64□□□□□ -1.67
SF3A1Q15459 AC012119.1-201ENST00000603184 222 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 Z82243.1-201ENST00000609432 473 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 AC006111.3-201ENST00000622137 383 ntBASIC4.64□□□□□ -1.67
SF3A1Q15459 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.64□□□□□ -1.67
SF3A1Q15459 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SF3A1Q15459 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SF3A1Q15459 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SF3A1Q15459 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AP001148.1-201ENST00000624124 2359 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.63□□□□□ -1.67
SF3A1Q15459 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SF3A1Q15459 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SF3A1Q15459 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SF3A1Q15459 SNORA60-201ENST00000362396 134 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SF3A1Q15459 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SF3A1Q15459 HSPE1P12-201ENST00000412576 301 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC138393.2-201ENST00000414742 246 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AL513185.2-201ENST00000425543 193 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC007560.1-201ENST00000426912 237 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AL360271.2-201ENST00000447710 161 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.63□□□□□ -1.67
SF3A1Q15459 RNU6-1208P-201ENST00000459588 107 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC007547.1-201ENST00000462177 490 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SF3A1Q15459 RPL32P34-201ENST00000486380 400 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC069499.1-201ENST00000489433 509 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 RNU2-69P-201ENST00000516061 100 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 RNU6-189P-201ENST00000516120 101 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AC025755.1-201ENST00000521306 278 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SF3A1Q15459 AP000763.2-201ENST00000540641 163 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AMZ2P1-203ENST00000565833 850 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 MIR3939-201ENST00000582614 106 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 AC005730.3-201ENST00000583067 366 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 ATP1B3P1-201ENST00000605365 821 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 DUSP12P1-201ENST00000612874 516 ntBASIC4.63□□□□□ -1.67
SF3A1Q15459 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.63□□□□□ -1.67
SF3A1Q15459 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SF3A1Q15459 AP004289.2-201ENST00000444413 1457 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms