Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA1P55317 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA1P55317 MTND5P14-201ENST00000441481 1267 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 FAM103A2P-201ENST00000444122 354 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC007327.1-201ENST00000447461 264 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 MTND1P31-201ENST00000449206 961 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 ZNF886P-201ENST00000450781 723 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 RNU6-420P-201ENST00000458780 107 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA1P55317 RPS15AP34-201ENST00000487776 387 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 RN7SL274P-201ENST00000492268 272 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA1P55317 SCARNA15.2-201ENST00000516409 127 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 RNA5SP471-201ENST00000516971 106 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA1P55317 AL132857.1-201ENST00000555180 708 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 HMGB1P14-201ENST00000557424 591 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC004987.4-201ENST00000603383 338 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC131235.4-201ENST00000609288 620 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC245884.12-201ENST00000615364 59 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.84□□□□□ -2.12
FOXA1P55317 AC008669.1-201ENST00000565823 2178 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL109809.4-201ENST00000603520 2185 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
FOXA1P55317 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
FOXA1P55317 RNU6-359P-201ENST00000365466 108 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 RNU6-1207P-201ENST00000384343 107 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 RNU6-1176P-201ENST00000390955 107 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 ERHP2-201ENST00000402323 299 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 RN7SKP192-201ENST00000411291 327 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 SPA17P1-201ENST00000416656 452 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 RPL7P37-201ENST00000425095 738 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.83□□□□□ -2.12
FOXA1P55317 AL139415.2-201ENST00000431968 163 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL512844.2-201ENST00000433990 593 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 FDX1P2-201ENST00000450769 375 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXA1P55317 MTATP6P14-201ENST00000455189 673 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 MTND1P16-201ENST00000465177 898 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.83□□□□□ -2.12
FOXA1P55317 UBL5P3-201ENST00000475112 231 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXA1P55317 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.83□□□□□ -2.12
FOXA1P55317 AP003497.1-201ENST00000528472 562 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AC124947.2-202ENST00000552735 133 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.83□□□□□ -2.12
FOXA1P55317 AC068135.2-201ENST00000569293 1028 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL353997.4-201ENST00000586196 166 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.83□□□□□ -2.12
FOXA1P55317 MTND3P19-201ENST00000603825 345 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL158050.2-201ENST00000605336 568 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 HOTTIP_4.1-201ENST00000618195 165 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AL603758.1-201ENST00000618654 241 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 AC244517.12-201ENST00000623581 663 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.83□□□□□ -2.12
FOXA1P55317 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
FOXA1P55317 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.83□□□□□ -2.12
FOXA1P55317 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.83□□□□□ -2.12
FOXA1P55317 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA1P55317 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
FOXA1P55317 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL161781.1-201ENST00000354277 403 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU6-97P-201ENST00000363387 104 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU6-1078P-201ENST00000364522 103 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU6-621P-201ENST00000364752 109 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 Y_RNA.311-201ENST00000365068 96 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU1-52P-201ENST00000384190 164 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU6-1035P-201ENST00000384477 107 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 MIR504-201ENST00000385065 83 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AL136310.1-201ENST00000404926 654 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 MIR1284-201ENST00000408337 120 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RNU4-22P-201ENST00000411058 166 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 MTATP6P20-201ENST00000414147 562 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 Z85995.1-201ENST00000415547 335 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AL135786.1-201ENST00000415892 214 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 RPS3AP37-201ENST00000419176 745 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AL953862.1-201ENST00000423016 168 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 BX276092.3-201ENST00000424182 230 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 HMGN2P19-201ENST00000425149 265 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC008850.1-201ENST00000427546 362 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 EEF1A1P39-201ENST00000440791 250 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 AC009296.1-201ENST00000443146 155 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXA1P55317 AC090515.1-201ENST00000465295 476 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 LARP1BP2-201ENST00000486594 519 ntBASIC1.82□□□□□ -2.12
FOXA1P55317 HMGB1P36-201ENST00000487709 576 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms