Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 MTCO3P45-201ENST00000443036 613 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.6□□□□□ -1.83
CTCFP49711 RPS27AP9-201ENST00000477681 438 ntBASIC3.6□□□□□ -1.83
CTCFP49711 MTND4P2-201ENST00000507767 1203 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.6□□□□□ -1.83
CTCFP49711 AP001804.3-201ENST00000525146 880 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.6□□□□□ -1.83
CTCFP49711 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.6□□□□□ -1.83
CTCFP49711 OR4H12P-201ENST00000556269 907 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 AC005951.2-201ENST00000576282 495 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC064872.1-201ENST00000604823 1072 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AP002826.1-201ENST00000608835 315 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC091304.9-201ENST00000612091 226 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC090970.3-201ENST00000612566 866 ntBASIC3.6□□□□□ -1.83
CTCFP49711 uc_338.12-201ENST00000616344 181 ntBASIC3.6□□□□□ -1.83
CTCFP49711 MIR6076-201ENST00000617521 113 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 AL021368.2-201ENST00000606125 5352 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AC092104.1-201ENST00000497346 1441 ntBASIC3.6□□□□□ -1.83
CTCFP49711 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CTCFP49711 AC007496.3-201ENST00000624987 3443 ntBASIC3.59□□□□□ -1.83
CTCFP49711 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.59□□□□□ -1.83
CTCFP49711 AC110754.1-201ENST00000399740 601 ntBASIC3.59□□□□□ -1.83
CTCFP49711 MTCO2P34-201ENST00000421994 607 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AL589872.1-201ENST00000426602 288 ntBASIC3.59□□□□□ -1.83
CTCFP49711 TRIAP1P1-201ENST00000427062 225 ntBASIC3.59□□□□□ -1.83
CTCFP49711 VN1R108P-201ENST00000431580 830 ntBASIC3.59□□□□□ -1.83
CTCFP49711 ELOCP30-201ENST00000447108 299 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AL033528.1-201ENST00000453780 140 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AC108059.3-201ENST00000456388 214 ntBASIC3.59□□□□□ -1.83
CTCFP49711 SNORD109B-201ENST00000458961 67 ntBASIC3.59□□□□□ -1.83
CTCFP49711 SNORD109A-201ENST00000459128 67 ntBASIC3.59□□□□□ -1.83
CTCFP49711 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.59□□□□□ -1.83
CTCFP49711 LARP1BP2-201ENST00000486594 519 ntBASIC3.59□□□□□ -1.83
CTCFP49711 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CTCFP49711 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 AC010265.1-201ENST00000513509 211 ntBASIC3.59□□□□□ -1.83
CTCFP49711 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 SNORA70.19-201ENST00000516717 90 ntBASIC3.59□□□□□ -1.83
CTCFP49711 SNORD59.2-201ENST00000516873 68 ntBASIC3.59□□□□□ -1.83
CTCFP49711 RNU6-64P-201ENST00000517119 105 ntBASIC3.59□□□□□ -1.83
CTCFP49711 FAM60DP-201ENST00000524174 632 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AC022690.1-201ENST00000526681 550 ntBASIC3.59□□□□□ -1.83
CTCFP49711 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.59□□□□□ -1.83
CTCFP49711 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.59□□□□□ -1.83
CTCFP49711 AC006362.1-201ENST00000567392 174 ntBASIC3.59□□□□□ -1.83
CTCFP49711 MIR4293-201ENST00000584305 78 ntBASIC3.59□□□□□ -1.83
CTCFP49711 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.59□□□□□ -1.83
CTCFP49711 SEPT7P9-203ENST00000604116 343 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AC064807.4-201ENST00000607201 407 ntBASIC3.59□□□□□ -1.83
CTCFP49711 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.59□□□□□ -1.83
CTCFP49711 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CTCFP49711 AC010678.1-201ENST00000614118 713 ntBASIC3.59□□□□□ -1.83
CTCFP49711 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.59□□□□□ -1.83
CTCFP49711 AL136313.1-201ENST00000624804 202 ntBASIC3.59□□□□□ -1.83
CTCFP49711 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.59□□□□□ -1.83
CTCFP49711 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
CTCFP49711 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CTCFP49711 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.59□□□□□ -1.84
CTCFP49711 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
CTCFP49711 ZNF658B-202ENST00000615961 3375 ntBASIC3.58□□□□□ -1.84
CTCFP49711 MAPK10-322ENST00000641485 4530 ntBASIC3.58□□□□□ -1.84
CTCFP49711 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CTCFP49711 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CTCFP49711 RNU5A-1-201ENST00000362698 116 ntBASIC3.58□□□□□ -1.84
CTCFP49711 RNU6-348P-201ENST00000384386 107 ntBASIC3.58□□□□□ -1.84
CTCFP49711 SAR1AP2-201ENST00000392696 594 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AL079342.1-201ENST00000401460 267 ntBASIC3.58□□□□□ -1.84
CTCFP49711 RNA5SP107-201ENST00000411358 122 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AL356968.1-201ENST00000416622 474 ntBASIC3.58□□□□□ -1.84
CTCFP49711 SPA17P1-201ENST00000416656 452 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.58□□□□□ -1.84
CTCFP49711 DPPA2P1-201ENST00000428060 556 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.58□□□□□ -1.84
CTCFP49711 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.58□□□□□ -1.84
CTCFP49711 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.58□□□□□ -1.84
CTCFP49711 GAPDHP27-201ENST00000447427 1020 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.58□□□□□ -1.84
CTCFP49711 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.58□□□□□ -1.84
CTCFP49711 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.58□□□□□ -1.84
CTCFP49711 RAP1BP2-201ENST00000478270 544 ntBASIC3.58□□□□□ -1.84
CTCFP49711 MTND1P3-201ENST00000484956 952 ntBASIC3.58□□□□□ -1.84
CTCFP49711 ARL2BPP4-201ENST00000506854 471 ntBASIC3.58□□□□□ -1.84
CTCFP49711 MTCO3P28-201ENST00000513351 515 ntBASIC3.58□□□□□ -1.84
CTCFP49711 SNORA31.1-201ENST00000515993 133 ntBASIC3.58□□□□□ -1.84
CTCFP49711 RNA5SP458-201ENST00000516188 119 ntBASIC3.58□□□□□ -1.84
CTCFP49711 SNORA31.5-201ENST00000516190 133 ntBASIC3.58□□□□□ -1.84
CTCFP49711 RNU2-46P-201ENST00000517038 113 ntBASIC3.58□□□□□ -1.84
CTCFP49711 RNA5SP380-201ENST00000517190 98 ntBASIC3.58□□□□□ -1.84
CTCFP49711 AC068657.1-201ENST00000520807 306 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 160.1 ms