Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 DEFB109C-201ENST00000382575 264 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 DEFB109B-201ENST00000382656 264 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 RNU6-701P-201ENST00000384059 107 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AL136116.1-201ENST00000403591 381 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AL356776.1-201ENST00000406574 447 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 RAC1P6-201ENST00000423911 575 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.09□□□□□ -1.75
SMARCA1P28370 ATP5JP1-201ENST00000431631 322 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 RPL36AP6-201ENST00000435770 321 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AL358232.1-201ENST00000448030 501 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AL118520.1-201ENST00000450770 291 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 RNU7-182P-201ENST00000459009 62 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 RNU6-507P-201ENST00000516045 100 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 SNORA70.18-201ENST00000516696 98 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 RN7SKP219-201ENST00000516825 296 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 Y_RNA.702-201ENST00000516843 96 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.09□□□□□ -1.75
SMARCA1P28370 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 AC093012.1-202ENST00000549403 582 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AL138976.2-201ENST00000563989 694 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 MIR5047-201ENST00000579212 100 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.09□□□□□ -1.75
SMARCA1P28370 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 BNIP3P9-201ENST00000603714 553 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 AP003122.6-201ENST00000623831 495 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 RIOK3P1-201ENST00000418778 1528 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.76
SMARCA1P28370 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
SMARCA1P28370 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.09□□□□□ -1.76
SMARCA1P28370 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.09□□□□□ -1.76
SMARCA1P28370 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
SMARCA1P28370 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.08□□□□□ -1.76
SMARCA1P28370 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SMARCA1P28370 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SMARCA1P28370 RNU6-179P-201ENST00000363350 107 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 Y_RNA.160-201ENST00000363677 92 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 RNU6-61P-201ENST00000365528 109 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.08□□□□□ -1.76
SMARCA1P28370 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SMARCA1P28370 MIR218-2-201ENST00000385006 110 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.08□□□□□ -1.76
SMARCA1P28370 AC007390.1-201ENST00000415722 356 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 ARF4P2-201ENST00000430209 526 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 RPL36AP53-201ENST00000432891 316 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 SETP5-201ENST00000437270 562 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.08□□□□□ -1.76
SMARCA1P28370 RPS20P20-201ENST00000460498 340 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC068647.1-201ENST00000489539 2265 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 EIF4EP3-201ENST00000498782 656 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC008628.2-201ENST00000502605 298 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 MTCO2P30-201ENST00000503662 364 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 RNU6-1231P-201ENST00000517185 103 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AP006587.4-201ENST00000526053 529 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC026333.2-201ENST00000542164 106 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.08□□□□□ -1.76
SMARCA1P28370 AL121576.1-201ENST00000556055 276 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 NCAPGP2-201ENST00000557911 754 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 MED28P6-201ENST00000558776 231 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC005951.2-201ENST00000576282 495 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.08□□□□□ -1.76
SMARCA1P28370 BDH2P1-201ENST00000602288 736 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC006504.8-201ENST00000621046 635 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AL589994.2-201ENST00000621124 579 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC011155.2-201ENST00000623202 216 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 AC025034.2-201ENST00000623264 286 ntBASIC4.08□□□□□ -1.76
SMARCA1P28370 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SMARCA1P28370 AC004972.1-201ENST00000623934 2209 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 MFSD8-236ENST00000641509 4050 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SMARCA1P28370 Y_RNA.86-201ENST00000363020 111 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 SNORD115-7-201ENST00000365306 82 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SMARCA1P28370 RNU6-1029P-201ENST00000384109 107 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 SNORA36C-201ENST00000384289 132 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 RNU6-903P-201ENST00000391270 109 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 UBE2V1P2-201ENST00000397758 440 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 RPS29P4-201ENST00000414733 161 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AC017079.2-201ENST00000416102 485 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 RPL21P111-201ENST00000418453 477 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 DBIP2-201ENST00000419076 262 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.07□□□□□ -1.76
SMARCA1P28370 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.07□□□□□ -1.76
SMARCA1P28370 HMGN2P31-201ENST00000432430 273 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 SNRPEP8-201ENST00000442866 260 ntBASIC4.07□□□□□ -1.76
SMARCA1P28370 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms