Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LSM1P1-201ENST00000438629 273 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC112198.4-201ENST00000515450 351 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 RNU6-496P-201ENST00000516145 99 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.88□□□□□ -2.27
COL6A3P12111 AC093510.2-201ENST00000562820 896 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 RPL21P136-201ENST00000605378 396 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.88□□□□□ -2.27
COL6A3P12111 Y_RNA.778-201ENST00000620203 90 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC130454.1-201ENST00000622948 401 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 OR6C66P-201ENST00000414917 930 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.87□□□□□ -2.27
COL6A3P12111 RNU6-287P-201ENST00000516230 98 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AP005597.4-201ENST00000526762 229 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 RSL24D1P11-201ENST00000591045 491 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AP000811.1-201ENST00000603803 651 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AC022387.2-201ENST00000604050 448 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.87□□□□□ -2.27
COL6A3P12111 RNY3P14-201ENST00000384309 102 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 RPS20P15-201ENST00000412792 311 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC0.87□□□□□ -2.27
COL6A3P12111 RNU2-44P-201ENST00000516795 194 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC0.87□□□□□ -2.27
COL6A3P12111 AC022880.1-201ENST00000534017 973 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.87□□□□□ -2.27
COL6A3P12111 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.87□□□□□ -2.27
COL6A3P12111 AC108676.2-201ENST00000605225 163 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AC103710.4-201ENST00000609301 899 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 AP006248.3-201ENST00000623580 594 ntBASIC0.87□□□□□ -2.27
COL6A3P12111 RNA5SP499-201ENST00000363982 119 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 RNA5SP167-201ENST00000365461 116 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 RPL21P90-201ENST00000415692 466 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.86□□□□□ -2.27
COL6A3P12111 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.86□□□□□ -2.27
COL6A3P12111 AL627224.1-201ENST00000448334 444 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 MRPS33P3-201ENST00000513456 322 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 SNORA3.4-201ENST00000515969 96 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 RNY1P9-201ENST00000532431 109 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC022079.2-201ENST00000619739 566 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC073592.7-201ENST00000623659 507 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC0.86□□□□□ -2.27
COL6A3P12111 SNORD118-201ENST00000363593 134 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 Y_RNA.410-201ENST00000383992 113 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
COL6A3P12111 RNA5SP498-201ENST00000411342 120 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.86□□□□□ -2.27
COL6A3P12111 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.86□□□□□ -2.27
COL6A3P12111 GPM6BP3-201ENST00000442797 145 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 Y_RNA.659-201ENST00000515994 113 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AP000776.1-201ENST00000530032 1663 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 OR5AQ1P-203ENST00000641818 1529 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC004022.2-201ENST00000413824 193 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 USP12PX-201ENST00000432383 1057 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 MTCO1P30-201ENST00000515244 580 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 SNORA48.11-201ENST00000517015 89 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC0.86□□□□□ -2.27
COL6A3P12111 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.86□□□□□ -2.27
COL6A3P12111 RPS15AP11-201ENST00000594193 385 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 AC243829.6-201ENST00000612652 106 ntBASIC0.86□□□□□ -2.27
COL6A3P12111 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
COL6A3P12111 AL390862.1-201ENST00000635467 1469 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
COL6A3P12111 RNU4-32P-201ENST00000363404 141 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 Z96811.1-201ENST00000445880 108 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 AC023141.11-201ENST00000508864 202 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 RNU6-567P-201ENST00000516746 107 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 SNORA31.25-201ENST00000517242 134 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 MIR3122-201ENST00000577243 73 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.85□□□□□ -2.27
COL6A3P12111 Y_RNA.28-201ENST00000362554 111 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 Y_RNA.403-201ENST00000383977 101 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.85□□□□□ -2.27
COL6A3P12111 HSFY3P-201ENST00000444242 1191 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 MTCO1P47-201ENST00000523889 1271 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 CENPUP1-201ENST00000526649 1202 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 AC079597.1-201ENST00000624306 508 ntBASIC0.85□□□□□ -2.27
COL6A3P12111 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
COL6A3P12111 U8.3-201ENST00000363321 132 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
COL6A3P12111 AC096649.2-201ENST00000416186 393 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC0.84□□□□□ -2.27
COL6A3P12111 ARF4P4-201ENST00000439608 520 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 RPL37P6-202ENST00000464216 403 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 SUB1P1-201ENST00000524415 382 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.84□□□□□ -2.27
COL6A3P12111 FAM106CP-201ENST00000582212 507 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 HMGN1P30-201ENST00000589286 268 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 AC140725.3-201ENST00000616193 880 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 AC068620.4-201ENST00000636730 1182 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 MTND5P11-201ENST00000511037 1812 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 ZNF702P-202ENST00000434269 1966 ntBASIC0.84□□□□□ -2.27
COL6A3P12111 Y_RNA.552-201ENST00000384665 112 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 AC015922.2-201ENST00000435593 184 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.84□□□□□ -2.28
COL6A3P12111 CASP1P1-201ENST00000526345 212 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 MIR4514-201ENST00000581410 57 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 DUXAP4-201ENST00000603046 613 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
COL6A3P12111 AL138976.2-201ENST00000563989 694 ntBASIC0.84□□□□□ -2.28
COL6A3P12111 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
COL6A3P12111 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms