Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MIR3945-201ENST00000581853 98 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AL353778.1-201ENST00000603149 408 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AL161729.4-201ENST00000604650 476 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AL355472.4-201ENST00000610233 626 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 SDR42E1P2-201ENST00000614861 481 ntBASIC2.69□□□□□ -1.98
SDC3O75056 MIR7844-201ENST00000616161 122 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC3O75056 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 AC079248.2-201ENST00000623779 326 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC097655.1-201ENST00000635075 318 ntBASIC2.69□□□□□ -1.98
SDC3O75056 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.69□□□□□ -1.98
SDC3O75056 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SDC3O75056 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 AC138915.1-201ENST00000565427 1685 ntBASIC2.69□□□□□ -1.98
SDC3O75056 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC3O75056 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.68□□□□□ -1.98
SDC3O75056 RNU1-35P-201ENST00000362782 153 ntBASIC2.68□□□□□ -1.98
SDC3O75056 U8.14-201ENST00000390843 143 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AL356057.3-201ENST00000402607 340 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC078974.1-201ENST00000411597 223 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AL513331.1-201ENST00000411908 397 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 AC107081.1-201ENST00000414975 361 ntBASIC2.68□□□□□ -1.98
SDC3O75056 MTND5P25-201ENST00000430499 799 ntBASIC2.68□□□□□ -1.98
SDC3O75056 MYL8P-204ENST00000431574 518 ntBASIC2.68□□□□□ -1.98
SDC3O75056 ELOCP30-201ENST00000447108 299 ntBASIC2.68□□□□□ -1.98
SDC3O75056 RPL23AP20-201ENST00000447965 421 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 AC008481.1-201ENST00000463278 396 ntBASIC2.68□□□□□ -1.98
SDC3O75056 RPL30P6-201ENST00000475925 342 ntBASIC2.68□□□□□ -1.98
SDC3O75056 TRBV12-1-201ENST00000479785 344 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC005178.1-201ENST00000508392 440 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC008413.1-201ENST00000511864 177 ntBASIC2.68□□□□□ -1.98
SDC3O75056 OR5BM1P-201ENST00000512021 366 ntBASIC2.68□□□□□ -1.98
SDC3O75056 MRPS33P3-201ENST00000513456 322 ntBASIC2.68□□□□□ -1.98
SDC3O75056 RNU6-390P-201ENST00000516259 103 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.68□□□□□ -1.98
SDC3O75056 AC091544.4-201ENST00000555268 342 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.68□□□□□ -1.98
SDC3O75056 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.68□□□□□ -1.98
SDC3O75056 PCMTD1P2-201ENST00000565017 355 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC091489.2-201ENST00000566263 604 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 ZNF861P-201ENST00000588126 639 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC023043.3-201ENST00000593113 385 ntBASIC2.68□□□□□ -1.98
SDC3O75056 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.68□□□□□ -1.98
SDC3O75056 MIR6817-201ENST00000615588 66 ntBASIC2.68□□□□□ -1.98
SDC3O75056 AC092608.2-201ENST00000624427 218 ntBASIC2.68□□□□□ -1.98
SDC3O75056 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SDC3O75056 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
SDC3O75056 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
SDC3O75056 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.67□□□□□ -1.98
SDC3O75056 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
SDC3O75056 Y_RNA.46-201ENST00000362695 102 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RNU5A-8P-201ENST00000364102 114 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RNU6-1180P-201ENST00000364935 107 ntBASIC2.67□□□□□ -1.98
SDC3O75056 XGY1-201ENST00000381172 446 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RNU6-140P-201ENST00000384566 108 ntBASIC2.67□□□□□ -1.98
SDC3O75056 MIR9-1-201ENST00000385198 89 ntBASIC2.67□□□□□ -1.98
SDC3O75056 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
SDC3O75056 CCNG1P1-201ENST00000406783 885 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RPL19P1-201ENST00000411635 428 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.67□□□□□ -1.98
SDC3O75056 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SDC3O75056 RPL21P24-201ENST00000413752 448 ntBASIC2.67□□□□□ -1.98
SDC3O75056 VPS26BP1-201ENST00000417155 755 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC3O75056 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC3O75056 ZNF863P-201ENST00000426746 417 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC3O75056 UBE2D3P1-201ENST00000436669 444 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC005094.1-201ENST00000440420 368 ntBASIC2.67□□□□□ -1.98
SDC3O75056 GDI2P2-201ENST00000445131 608 ntBASIC2.67□□□□□ -1.98
SDC3O75056 MTCO1P42-201ENST00000457379 726 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC087588.1-201ENST00000462203 316 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RPS27AP9-201ENST00000477681 438 ntBASIC2.67□□□□□ -1.98
SDC3O75056 RPS3AP22-201ENST00000488297 769 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC3O75056 RNU6-201P-201ENST00000517100 61 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.67□□□□□ -1.98
SDC3O75056 AP000907.2-201ENST00000530827 353 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC008015.1-201ENST00000555505 465 ntBASIC2.67□□□□□ -1.98
SDC3O75056 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.67□□□□□ -1.98
SDC3O75056 AL355877.2-201ENST00000603670 358 ntBASIC2.67□□□□□ -1.98
SDC3O75056 MTCYBP22-201ENST00000603788 447 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC136601.2-201ENST00000604356 474 ntBASIC2.67□□□□□ -1.98
SDC3O75056 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.67□□□□□ -1.98
SDC3O75056 AC079416.3-201ENST00000624479 549 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AC092192.1-201ENST00000633154 1018 ntBASIC2.67□□□□□ -1.98
SDC3O75056 AP003399.1-201ENST00000637534 361 ntBASIC2.67□□□□□ -1.98
SDC3O75056 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
SDC3O75056 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
SDC3O75056 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms