Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC004924.1-201ENST00000480160 781 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC110794.1-201ENST00000505816 425 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC010493.1-201ENST00000513479 292 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 RNU6-1220P-201ENST00000517126 108 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC068135.2-201ENST00000569293 1028 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 MIR5680-201ENST00000577577 84 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC004805.2-201ENST00000605382 482 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC005000.2-201ENST00000605468 310 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC11O43248 AL139286.2-201ENST00000606838 396 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 LRRC77P-213ENST00000637727 880 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.47□□□□□ -1.85
HOXC11O43248 API5P2-201ENST00000397055 1498 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC11O43248 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
HOXC11O43248 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
HOXC11O43248 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC11O43248 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.46□□□□□ -1.86
HOXC11O43248 OR5J1P-201ENST00000313544 939 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 RNU5A-6P-201ENST00000384136 116 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AL139397.2-201ENST00000404529 772 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 Z92545.1-201ENST00000411782 234 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXC11O43248 RPL23AP30-201ENST00000432419 501 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 RPL36AP53-201ENST00000432891 316 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AL357552.1-201ENST00000445254 415 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC11O43248 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC11O43248 ARL4AP2-201ENST00000507378 601 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXC11O43248 AC090572.1-201ENST00000519251 160 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXC11O43248 MTCO3P24-201ENST00000572729 782 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 MIR4738-201ENST00000579134 87 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AC073657.2-201ENST00000605661 303 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXC11O43248 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 AC022149.2-201ENST00000621061 203 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 MIR7153-201ENST00000637758 57 ntBASIC3.46□□□□□ -1.86
HOXC11O43248 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXC11O43248 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXC11O43248 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
HOXC11O43248 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC11O43248 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXC11O43248 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
HOXC11O43248 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXC11O43248 AC007496.3-201ENST00000624987 3443 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HOXC11O43248 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HOXC11O43248 RNA5SP197-201ENST00000363357 119 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RNU6-1097P-201ENST00000363586 107 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RNU4-24P-201ENST00000364565 139 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 Y_RNA.436-201ENST00000384097 102 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 Y_RNA.559-201ENST00000384686 107 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXC11O43248 MTCO2P7-201ENST00000446518 666 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 Z75741.1-201ENST00000446793 314 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXC11O43248 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXC11O43248 AC093392.2-201ENST00000450682 337 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RPS29P2-201ENST00000479278 136 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RPS15AP34-201ENST00000487776 387 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 MTCO3P7-201ENST00000510008 774 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 RNA5SP165-201ENST00000517142 115 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AP003392.2-201ENST00000527269 208 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXC11O43248 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXC11O43248 AC005476.1-201ENST00000554427 397 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 DNAJC8P1-201ENST00000554535 372 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 MIR5004-201ENST00000579078 107 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC004223.2-201ENST00000590309 544 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC087683.1-201ENST00000591187 441 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXC11O43248 AC011939.3-201ENST00000613686 466 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC099842.1-201ENST00000619919 596 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 AC099506.2-201ENST00000623074 221 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXC11O43248 AC010680.1-201ENST00000590024 3590 ntBASIC3.45□□□□□ -1.86
HOXC11O43248 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HOXC11O43248 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXC11O43248 Y_RNA.194-201ENST00000363985 102 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 RNU6-108P-201ENST00000365558 107 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HOXC11O43248 RNU6-456P-201ENST00000384493 107 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 MIR888-201ENST00000401186 77 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 AL357075.1-201ENST00000404107 726 ntBASIC3.44□□□□□ -1.86
HOXC11O43248 Z99755.1-201ENST00000414048 380 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms