Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SNORD14.1-201ENST00000365609 90 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.483-201ENST00000384380 101 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 Y_RNA.552-201ENST00000384665 112 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-713P-201ENST00000384761 107 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 SNORD96B-201ENST00000386148 79 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AL590704.1-201ENST00000402856 794 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 UBE2V1P4-201ENST00000425374 344 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AC004866.2-201ENST00000438285 481 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-1132P-201ENST00000459214 107 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RNU7-138P-201ENST00000459479 64 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 AP000926.1-201ENST00000479573 241 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 MTND1P19-201ENST00000511780 315 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 SNORA31.9-201ENST00000516429 84 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RNU6-352P-201ENST00000516908 107 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 MIR3128-201ENST00000581957 66 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 MIR5188-201ENST00000583467 113 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RNF138P2-201ENST00000603490 592 ntBASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.53□□□□□ -1.52
CHMP3Q9Y3E7 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC125257.1-201ENST00000560400 2930 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC000123.3-201ENST00000624029 4975 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 Y_RNA.60-201ENST00000362831 98 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-371P-201ENST00000364283 108 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-1329P-201ENST00000365664 107 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RNU1-63P-201ENST00000383902 164 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 RNU2-38P-201ENST00000410856 79 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AL031274.1-201ENST00000450334 232 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AF186190.1-201ENST00000517470 480 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 IGHV3-76-201ENST00000522465 295 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AL355812.1-201ENST00000603215 216 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC174048.1-201ENST00000603389 144 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC113403.1-201ENST00000604910 193 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 MIR6716-201ENST00000613413 80 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 DHX9P1-201ENST00000436565 3076 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 PABPC1P7-201ENST00000413177 1513 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 AC010615.1-201ENST00000594254 1764 ntBASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.52□□□□□ -1.53
CHMP3Q9Y3E7 MAPK10-303ENST00000641324 3959 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-806P-201ENST00000365147 105 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RNU2-64P-201ENST00000411315 191 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RPL21P90-201ENST00000415692 466 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC108032.1-201ENST00000416706 207 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RPL21P41-201ENST00000459863 264 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC040926.1-201ENST00000530195 238 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RPL23AP87-202ENST00000573039 466 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 MTND4LP5-201ENST00000605152 292 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC004805.2-201ENST00000605382 482 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 RNU6-85P-201ENST00000605989 107 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 MIR15A-201ENST00000607334 83 ntBASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CHMP3Q9Y3E7 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
CHMP3Q9Y3E7 Y_RNA.350-201ENST00000365409 98 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms