Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 Y_RNA.572-201ENST00000384757 98 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP44-201ENST00000410446 133 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 TMEM183AP1-205ENST00000432739 290 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AL158147.1-201ENST00000443970 75 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC004832.5-201ENST00000608677 401 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 AC022400.9-201ENST00000623633 273 ntBASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS9D1Q9Y2B5 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AL138820.1-201ENST00000617901 5305 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP477-201ENST00000362639 119 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-801P-201ENST00000364087 105 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP173-201ENST00000364857 136 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 MIR130A-201ENST00000385274 89 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 MIR888-201ENST00000401186 77 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AL354868.1-201ENST00000417077 482 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 CYCSP51-201ENST00000443545 318 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AL589765.3-201ENST00000446084 462 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC245047.8-201ENST00000456455 284 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RN7SL189P-201ENST00000468631 289 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.667-201ENST00000516212 107 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC096996.1-201ENST00000563813 325 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 MIR4675-201ENST00000577898 77 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC025521.1-201ENST00000621624 286 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC114774.1-201ENST00000507410 1770 ntBASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.69□□□□□ -1.5
VPS9D1Q9Y2B5 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 SAGE2P-201ENST00000420011 2126 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 RNA5SP273-201ENST00000362484 113 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 SNORD115-8-201ENST00000363856 82 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 SNORD115-38-201ENST00000365037 82 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-142P-201ENST00000384019 107 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 RNU6-1310P-201ENST00000384153 107 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 MIR487A-201ENST00000385009 80 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 SNORA40C-201ENST00000391285 128 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 MIR1203-201ENST00000408812 85 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 MRPL53P1-201ENST00000414323 319 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AL358075.3-201ENST00000426289 226 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 RPL12P46-201ENST00000436610 195 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 EIF4A1P11-201ENST00000451239 222 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 NXT1P1-201ENST00000458481 316 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 Y_RNA.692-201ENST00000516627 105 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 snoU109.6-201ENST00000516831 118 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AC136628.3-201ENST00000521868 290 ntBASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS9D1Q9Y2B5 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms