Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 RNU5E-8P-201ENST00000363502 116 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 SNORD56.3-201ENST00000363507 71 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 Y_RNA.381-201ENST00000365666 102 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 RNU6-637P-201ENST00000384050 107 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 RNU6-39P-201ENST00000384344 107 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 SNORD67-201ENST00000390833 111 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AC068050.1-201ENST00000394891 380 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 BEND7P1-201ENST00000422058 457 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 MTND4P18-201ENST00000447010 465 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 MTND2P24-201ENST00000453434 806 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AC234775.1-201ENST00000454247 670 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 RPS4XP22-201ENST00000480755 780 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 FAM92A1P2-202ENST00000504766 877 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AC008885.1-201ENST00000514930 301 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 OR5AQ1P-201ENST00000527596 927 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 DEFB108D-201ENST00000527787 222 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 SNORA59B-202ENST00000578183 701 ntBASIC3.34□□□□□ -1.87
SIX4Q9UIU6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.34□□□□□ -1.87
SIX4Q9UIU6 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.34□□□□□ -1.88
SIX4Q9UIU6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNY1P12-201ENST00000364251 105 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNU6-629P-201ENST00000384061 103 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNU6-432P-201ENST00000384196 109 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 CCDC58P2-201ENST00000417131 366 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 TIMM9P3-201ENST00000428659 274 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC000111.3-201ENST00000433478 193 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RPL23AP83-201ENST00000434984 473 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC093156.1-201ENST00000440382 670 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 SNORA74D-201ENST00000516404 141 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNU6-1178P-201ENST00000516674 107 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNU6-64P-201ENST00000517119 105 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RNU6-1231P-201ENST00000517185 103 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 RPS3AP4-201ENST00000555161 764 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC006504.3-201ENST00000586818 523 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AP001596.2-201ENST00000608410 312 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC017083.3-201ENST00000609955 700 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AL353748.2-201ENST00000622148 471 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC092628.2-201ENST00000622492 339 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC099506.2-201ENST00000623074 221 ntBASIC3.33□□□□□ -1.88
SIX4Q9UIU6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX4Q9UIU6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC073325.2-201ENST00000339545 159 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RNU6-511P-201ENST00000363496 107 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RNU6-1085P-201ENST00000363576 107 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RNU1-39P-201ENST00000383897 165 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 Y_RNA.402-201ENST00000383972 102 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 SNORD15B-201ENST00000384714 146 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RPS3AP24-201ENST00000407896 734 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 MIR1277-201ENST00000408536 78 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 MTATP6P18-201ENST00000417994 673 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 GPR143P-201ENST00000434155 205 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC005094.1-201ENST00000440420 368 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC027673.1-201ENST00000456245 405 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AL049714.1-201ENST00000466686 347 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC079382.1-201ENST00000493346 557 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RPL7P23-201ENST00000493874 747 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC026801.2-201ENST00000515352 425 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 RNA5SP217-201ENST00000515959 91 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 SNORA64.4-201ENST00000516632 81 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 Y_RNA.693-201ENST00000516641 110 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AP003072.2-201ENST00000527756 676 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC125611.2-201ENST00000551907 647 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AL121603.1-201ENST00000553815 142 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AL512360.1-201ENST00000555346 234 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 MIR4293-201ENST00000584305 78 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 GLUD1P4-201ENST00000590914 418 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC012507.3-201ENST00000603556 477 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 AC025449.1-201ENST00000603896 529 ntBASIC3.32□□□□□ -1.88
SIX4Q9UIU6 Z84480.1-201ENST00000605131 311 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 146.9 ms