Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC107871.2-201ENST00000612894 502 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC068880.5-201ENST00000624331 290 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC110079.1-202ENST00000635213 138 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 AC092435.3-201ENST00000565538 3654 ntBASIC2.7□□□□□ -1.98
LHX3Q9UBR4 FAM35CP-201ENST00000554755 2470 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC108206.1-201ENST00000570186 4159 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC008669.1-201ENST00000565823 2178 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 FTLP6-201ENST00000355274 422 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 RNU6-1284P-201ENST00000363701 100 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 BTF3L4P3-201ENST00000418879 476 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 MTND4P20-201ENST00000424125 869 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL365496.1-201ENST00000426885 215 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 ARL5AP4-201ENST00000430731 512 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 UBE2D3P1-201ENST00000436669 444 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL512286.1-201ENST00000439244 400 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL139824.2-201ENST00000458731 1095 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 RNU7-23P-201ENST00000459465 62 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 RNA5SP290-201ENST00000517133 127 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 MTND4LP18-201ENST00000526864 291 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC090888.1-201ENST00000561335 1141 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC091489.2-201ENST00000566263 604 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC090616.2-202ENST00000584248 222 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC004832.5-201ENST00000608677 401 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 FTX_3.1-201ENST00000610451 147 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC004223.4-201ENST00000612426 332 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC009159.1-201ENST00000618386 642 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC093591.3-201ENST00000634516 308 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AC099654.7-201ENST00000635788 2127 ntBASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.69□□□□□ -1.98
LHX3Q9UBR4 AL365361.1-201ENST00000566942 3481 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RNU1-105P-201ENST00000363470 161 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RNU6-809P-201ENST00000384461 107 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RNA5SP354-201ENST00000391247 136 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 MIR1289-1-201ENST00000408836 144 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 USP9YP13-201ENST00000417797 480 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ATG3P1-201ENST00000419507 911 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 HMGN2P30-201ENST00000423237 256 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AL365184.2-201ENST00000431139 435 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RPL22P17-201ENST00000438729 315 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RPL23AP58-201ENST00000440453 469 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 MRPL50P4-201ENST00000446432 475 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ZNF114P1-201ENST00000453500 292 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC087588.1-201ENST00000462203 316 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RPS3AP22-201ENST00000488297 769 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC119751.5-201ENST00000514077 770 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RNA5SP385-201ENST00000515947 110 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 RN7SKP258-201ENST00000517151 304 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AL158211.1-201ENST00000566763 763 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 MIR3146-201ENST00000580367 79 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AC007998.5-201ENST00000622938 237 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 AP003485.2-201ENST00000623636 610 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.68□□□□□ -1.98
LHX3Q9UBR4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.68□□□□□ -1.98
LHX3Q9UBR4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AL445523.1-201ENST00000451184 1362 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 Y_RNA.245-201ENST00000364493 95 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 Y_RNA.560-201ENST00000384689 102 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 RNU2-62P-201ENST00000410868 191 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 ELOCP17-201ENST00000414751 326 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AL353777.1-201ENST00000425552 326 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 OR2B8P-201ENST00000432841 938 ntBASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.67□□□□□ -1.98
LHX3Q9UBR4 AC118469.1-201ENST00000442943 488 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms