Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 UBA52P6-201ENST00000399822 382 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 MTCYBP36-201ENST00000404146 440 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 RNU2-25P-201ENST00000411041 191 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 ELOCP17-201ENST00000414751 326 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 RPS6P15-201ENST00000431996 751 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 DDX3P2-201ENST00000446138 111 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 RNU7-23P-201ENST00000459465 62 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AP001486.1-201ENST00000463339 476 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 MTND4LP3-201ENST00000468320 276 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC109925.1-201ENST00000478069 331 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AL049873.1-201ENST00000480540 376 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC138853.1-201ENST00000503549 823 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC098862.1-201ENST00000504991 413 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AF131216.2-201ENST00000512316 564 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC022616.6-201ENST00000520479 119 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AL137843.1-201ENST00000605078 385 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AL391813.2-201ENST00000609113 322 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 AL161734.1-201ENST00000609720 557 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 uc_338.12-201ENST00000616344 181 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 OR1S2-201ENST00000302592 978 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 FTLP6-201ENST00000355274 422 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 RNY3P13-201ENST00000365542 102 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 SNORA7.4-201ENST00000384249 137 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 Y_RNA.500-201ENST00000384466 111 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 USP9YP13-201ENST00000417797 480 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 COTL1P1-201ENST00000422309 375 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL365496.1-201ENST00000426885 215 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL671855.1-201ENST00000446875 1203 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL590365.1-201ENST00000450788 243 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 RPL27AP5-201ENST00000469428 449 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 RPS3AP14-201ENST00000483907 780 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 RPF2P2-201ENST00000504693 896 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC114797.1-201ENST00000514003 728 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 RNU6-759P-201ENST00000516740 103 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC106038.2-201ENST00000520706 568 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 DUXAP5-201ENST00000529668 529 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 ZNF519P3-201ENST00000557158 1032 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL158211.1-201ENST00000566763 763 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 MIR5697-201ENST00000578045 78 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC008739.2-201ENST00000597006 317 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AP000787.2-201ENST00000604432 568 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL359999.1-201ENST00000604513 294 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC108747.1-201ENST00000609508 535 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC034102.8-201ENST00000615146 484 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC027807.2-201ENST00000616099 408 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC104010.1-201ENST00000616889 150 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AC138932.5-201ENST00000617759 563 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AP003485.2-201ENST00000623636 610 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 AF246928.1-201ENST00000623768 87 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
DDX28Q9NUL7 Z82195.2-201ENST00000612348 18351 ntBASIC2.74□□□□□ -1.97
DDX28Q9NUL7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
DDX28Q9NUL7 AC008669.1-201ENST00000565823 2178 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms