Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AL159972.1-201ENST00000625150 448 ntBASIC2.07□□□□□ -2.08
EXOSC4Q9NPD3 AC009902.3-201ENST00000606235 2172 ntBASIC2.07□□□□□ -2.08
EXOSC4Q9NPD3 DDX43P2-201ENST00000604753 1354 ntBASIC2.07□□□□□ -2.08
EXOSC4Q9NPD3 AL138713.1-201ENST00000624026 2130 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC092447.10-201ENST00000620607 1652 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC062016.1-201ENST00000355719 319 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 SNORA80A-201ENST00000363922 136 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 SNORA4.1-201ENST00000364263 144 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RNU1-52P-201ENST00000384190 164 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RN7SKP140-201ENST00000411196 284 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 UBE2FP1-201ENST00000416536 447 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL445669.1-201ENST00000426743 755 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 TXNL1P1-201ENST00000429528 554 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 SDR42E1P3-201ENST00000438345 502 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 Z82210.1-201ENST00000440037 231 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL831737.1-201ENST00000441288 271 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AP000542.1-201ENST00000448473 371 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AP1S2P1-201ENST00000457344 379 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RPS20P20-201ENST00000460498 340 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RN7SL432P-201ENST00000484057 298 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC096576.1-201ENST00000489014 359 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RPS15AP36-201ENST00000492022 382 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC090255.1-201ENST00000495779 349 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RNA5SP320-201ENST00000516263 124 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC022634.1-201ENST00000520765 532 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 SUB1P1-201ENST00000524415 382 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC025281.1-201ENST00000567026 265 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 MTND1P8-201ENST00000571424 950 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC060771.1-201ENST00000582031 164 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL139418.1-201ENST00000613613 177 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC068057.2-201ENST00000624047 895 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AL356596.1-201ENST00000624230 379 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 AC022336.2-201ENST00000568966 2538 ntBASIC2.06□□□□□ -2.08
EXOSC4Q9NPD3 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 SNORA5B-201ENST00000363786 132 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 RNA5SP37-201ENST00000365420 130 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 RNU6-301P-201ENST00000384277 107 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 RNU6-754P-201ENST00000391166 107 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC119751.3-201ENST00000399720 670 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AL109755.1-201ENST00000401791 649 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC023141.4-201ENST00000412031 328 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 FCF1P1-201ENST00000432690 571 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 PIGFP3-201ENST00000441918 722 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 CBWD4P-201ENST00000445695 655 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 TPT1P14-201ENST00000448018 505 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 USP9YP10-201ENST00000454868 628 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 MRPS17P3-201ENST00000465453 385 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC109486.1-201ENST00000486833 374 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC114786.4-201ENST00000508771 728 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 HSPE1P23-201ENST00000509838 286 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC026436.1-201ENST00000510537 270 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC114797.1-201ENST00000514003 728 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 NRON-201ENST00000517270 370 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 IGLV3-17-201ENST00000519099 244 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC023538.1-201ENST00000534576 736 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC074050.1-201ENST00000563247 211 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC023824.2-201ENST00000566185 400 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 ISCA1P3-201ENST00000577104 373 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AL033523.1-201ENST00000605153 153 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC112220.3-201ENST00000605502 502 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 OR10AB1P-201ENST00000609613 938 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC097478.2-201ENST00000610572 514 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC092106.3-201ENST00000611308 722 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 AC016597.2-201ENST00000613256 341 ntBASIC2.05□□□□□ -2.08
EXOSC4Q9NPD3 TUG1_2.1-201ENST00000614234 87 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms