Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
USP42Q9H9J4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
USP42Q9H9J4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.23□□□□□ -2.05
USP42Q9H9J4 AL049641.1-201ENST00000441055 1948 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 AL139276.1-201ENST00000311910 1001 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 SNORA68.1-201ENST00000364537 132 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 Y_RNA.355-201ENST00000365462 98 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 Z98749.2-208ENST00000381646 500 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AL450338.1-201ENST00000407987 512 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AC018630.2-202ENST00000422992 927 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 USP9YP15-201ENST00000442391 422 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AC005297.2-201ENST00000450430 606 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 MTND2P30-201ENST00000456663 382 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 AC010460.2-201ENST00000509054 677 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AC022483.1-201ENST00000514020 567 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AP002748.2-201ENST00000528671 348 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 LINC00557-201ENST00000563184 1279 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 BNIP3P24-201ENST00000593398 557 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 MIR6895-201ENST00000613497 78 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 HMGB1P24-202ENST00000615653 685 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 AL512643.1-201ENST00000635735 524 ntBASIC2.22□□□□□ -2.05
USP42Q9H9J4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.22□□□□□ -2.05
USP42Q9H9J4 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
USP42Q9H9J4 SNORA16.1-201ENST00000364597 132 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 SNORA25.9-201ENST00000365087 128 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 MIR144-201ENST00000384886 86 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 SNRPEP2-201ENST00000397592 279 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AL513331.1-201ENST00000411908 397 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 Z80107.1-201ENST00000436830 412 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 HMGB1P31-201ENST00000437242 427 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC092393.1-201ENST00000439625 742 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 USP9YP34-201ENST00000453983 808 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC105252.1-201ENST00000503089 286 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC121758.2-201ENST00000553271 193 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AL022067.1-201ENST00000602426 454 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AP002906.1-201ENST00000603405 233 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 MIR502-201ENST00000606349 86 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC093838.1-201ENST00000613014 469 ntBASIC2.21□□□□□ -2.06
USP42Q9H9J4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
USP42Q9H9J4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.21□□□□□ -2.06
USP42Q9H9J4 CCT4P2-201ENST00000233836 1548 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 MTND4P21-201ENST00000453886 1357 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 SNORD48-201ENST00000364953 64 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 RNU6-932P-201ENST00000391108 106 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 AL513475.1-201ENST00000406602 315 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 CCDC58P2-201ENST00000417131 366 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 MTCYBP32-201ENST00000427945 1084 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 MTCYBP45-201ENST00000435243 565 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 COX6CP18-201ENST00000448769 222 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AL353691.1-201ENST00000451332 387 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 AL139109.1-201ENST00000455491 297 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
USP42Q9H9J4 BOLA3P3-201ENST00000505182 232 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC004067.1-201ENST00000608733 700 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC004009.2-201ENST00000623016 728 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
USP42Q9H9J4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP42Q9H9J4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
USP42Q9H9J4 AC004520.1-201ENST00000608362 1413 ntBASIC2.2□□□□□ -2.06
USP42Q9H9J4 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP42Q9H9J4 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 NDUFB4P7-201ENST00000423198 363 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 HMGN2P19-201ENST00000425149 265 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC098614.2-201ENST00000426040 255 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AL645568.3-201ENST00000433683 316 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AL049734.2-201ENST00000441066 616 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 MTND2P3-201ENST00000452458 470 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 MTCO1P42-201ENST00000457379 726 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 RBM43P1-201ENST00000476891 1081 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 LARP1BP2-201ENST00000486594 519 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC090453.1-201ENST00000495560 436 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 SUB1P1-201ENST00000524415 382 ntBASIC2.19□□□□□ -2.06
USP42Q9H9J4 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
USP42Q9H9J4 AC124947.2-202ENST00000552735 133 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms