Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 OR1AA1P-201ENST00000419597 916 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AL365400.1-201ENST00000431854 640 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 GPM6BP2-201ENST00000432046 144 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RPL23AP30-201ENST00000432419 501 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC005019.1-201ENST00000436455 431 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 GPM6BP1-201ENST00000446387 144 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RPS20P32-201ENST00000456044 356 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AL136097.1-201ENST00000456945 913 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 U3.44-201ENST00000458938 192 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RNU6-261P-201ENST00000459506 102 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC233702.1-201ENST00000482905 502 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RN7SKP60-201ENST00000516985 239 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC107934.1-201ENST00000522215 217 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC010525.2-201ENST00000590920 195 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC005000.2-201ENST00000605468 310 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 OR10AB1P-201ENST00000609613 938 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC105429.2-201ENST00000610567 517 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 AC010149.2-201ENST00000637608 315 ntBASIC3.65□□□□□ -1.83
EBF3Q9H4W6 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
EBF3Q9H4W6 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RNA5SP258-201ENST00000362750 119 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 Y_RNA.234-201ENST00000364409 97 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 SNORA63C-201ENST00000364578 129 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RNU6-738P-201ENST00000384531 106 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RN7SKP32-201ENST00000410167 303 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RPL35AP12-201ENST00000425362 338 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC127537.2-201ENST00000439258 465 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC108734.1-201ENST00000439549 399 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 BNIP3P2-201ENST00000441221 577 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RPL7P12-201ENST00000446719 750 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 Y_RNA.632-201ENST00000459189 102 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC010587.1-201ENST00000505809 469 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RN7SKP209-201ENST00000516888 304 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RN7SKP116-201ENST00000516902 319 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC022616.3-201ENST00000523940 148 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AL603758.1-201ENST00000618654 241 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 MTND5P33-201ENST00000571250 1450 ntBASIC3.64□□□□□ -1.83
EBF3Q9H4W6 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
EBF3Q9H4W6 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AC092125.1-201ENST00000562568 1995 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 RNU6-1120P-201ENST00000362988 108 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 Y_RNA.216-201ENST00000364205 93 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 SNORA20.2-201ENST00000383922 131 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 MIR606-201ENST00000384851 96 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AL591416.1-201ENST00000404015 867 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 RPL31P12-201ENST00000422587 358 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AL049734.2-201ENST00000441066 616 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AL136380.1-201ENST00000447970 162 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 RPL7P52-201ENST00000449200 742 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AC115115.1-201ENST00000449927 248 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 BX276092.4-201ENST00000452056 248 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 snoU13.8-201ENST00000458890 104 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 RN7SL807P-201ENST00000470923 297 ntBASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.63□□□□□ -1.83
EBF3Q9H4W6 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 151.9 ms