Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.67□□□□□ -2.3
VPS13AQ96RL7 RNU2-22P-201ENST00000411266 212 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 MIR4514-201ENST00000581410 57 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.67□□□□□ -2.3
VPS13AQ96RL7 AC091932.3-201ENST00000624223 323 ntBASIC0.67□□□□□ -2.3
VPS13AQ96RL7 MIR329-1-201ENST00000385028 80 ntBASIC0.66□□□□□ -2.3
VPS13AQ96RL7 SUB1P1-201ENST00000524415 382 ntBASIC0.66□□□□□ -2.3
VPS13AQ96RL7 AC004812.1-201ENST00000540773 146 ntBASIC0.66□□□□□ -2.3
VPS13AQ96RL7 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.66□□□□□ -2.3
VPS13AQ96RL7 AC013244.3-201ENST00000605614 388 ntBASIC0.66□□□□□ -2.3
VPS13AQ96RL7 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
VPS13AQ96RL7 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.65□□□□□ -2.3
VPS13AQ96RL7 SNORD56-201ENST00000413522 71 ntBASIC0.65□□□□□ -2.3
VPS13AQ96RL7 RPL21P24-201ENST00000413752 448 ntBASIC0.65□□□□□ -2.3
VPS13AQ96RL7 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.65□□□□□ -2.3
VPS13AQ96RL7 SNORA31.25-201ENST00000517242 134 ntBASIC0.65□□□□□ -2.3
VPS13AQ96RL7 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC0.65□□□□□ -2.3
VPS13AQ96RL7 AC010620.1-201ENST00000601088 1102 ntBASIC0.65□□□□□ -2.3
VPS13AQ96RL7 RNU6-30P-201ENST00000384561 107 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 SNRPEP4-201ENST00000435815 279 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 OR5B19P-201ENST00000531766 928 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 IL33-202ENST00000417746 2327 ntTSL 2 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 HMGB3P3-201ENST00000510526 400 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.65□□□□□ -2.31
VPS13AQ96RL7 AL118508.4-201ENST00000624142 1176 ntBASIC0.65□□□□□ -2.31
VPS13AQ96RL7 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.64□□□□□ -2.31
VPS13AQ96RL7 AL356057.2-201ENST00000403318 432 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 VN1R42P-201ENST00000424651 344 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 AP003484.1-201ENST00000530974 250 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.64□□□□□ -2.31
VPS13AQ96RL7 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
VPS13AQ96RL7 MIR524-201ENST00000385242 87 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 HSPE1P1-201ENST00000421494 318 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 SDAD1P3-201ENST00000427380 333 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.64□□□□□ -2.31
VPS13AQ96RL7 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC0.64□□□□□ -2.31
VPS13AQ96RL7 SUMO2P2-201ENST00000456482 255 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 PCNAP1-201ENST00000505363 709 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 AC091812.1-201ENST00000432235 1948 ntBASIC0.64□□□□□ -2.31
VPS13AQ96RL7 SNORD114-15-201ENST00000364687 72 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 RNA5SP299-201ENST00000391203 116 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 RAB9AP2-201ENST00000443911 597 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC091965.2-201ENST00000512324 613 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 MTND4LP24-201ENST00000572277 291 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC083899.3-201ENST00000603413 594 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 RNA5SP266-201ENST00000410273 108 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC244453.4-201ENST00000419150 388 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC246680.2-201ENST00000422106 389 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC010099.1-201ENST00000455434 375 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 CYP2C61P-201ENST00000604072 290 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AL162373.1-201ENST00000620433 407 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 RPS27AP18-201ENST00000515536 459 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC0.63□□□□□ -2.31
VPS13AQ96RL7 DUXAP4-201ENST00000603046 613 ntBASIC0.63□□□□□ -2.31
VPS13AQ96RL7 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.62□□□□□ -2.31
VPS13AQ96RL7 RPL31P52-201ENST00000407532 367 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.62□□□□□ -2.31
VPS13AQ96RL7 RNU1-98P-201ENST00000458992 160 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 AC105252.1-201ENST00000503089 286 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 AC098591.2-201ENST00000510152 315 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 CYCSP26-201ENST00000534107 320 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 FAM106CP-201ENST00000582212 507 ntBASIC0.62□□□□□ -2.31
VPS13AQ96RL7 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.62□□□□□ -2.31
VPS13AQ96RL7 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.62□□□□□ -2.31
VPS13AQ96RL7 CBX3P1-201ENST00000325243 554 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RNU6-1164P-201ENST00000364428 107 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 SNORA46.1-201ENST00000391069 153 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL356379.1-201ENST00000414105 126 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 ZNF736P3Y-201ENST00000428264 1465 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RNU6-758P-201ENST00000516292 89 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AP003327.1-201ENST00000529684 127 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AC021646.1-201ENST00000605469 484 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AC092832.1-201ENST00000422934 400 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL591043.1-201ENST00000432461 424 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL161788.1-201ENST00000441805 169 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RNU6-970P-201ENST00000516312 107 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL078605.1-201ENST00000603529 500 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AL161912.3-201ENST00000605404 628 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RNU1-101P-201ENST00000391171 127 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 RPS27P26-201ENST00000494583 239 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 MRPS17P9-201ENST00000511924 393 ntBASIC0.61□□□□□ -2.31
VPS13AQ96RL7 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS13AQ96RL7 AC010735.1-201ENST00000567305 1026 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms