Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNA5SP393-201ENST00000363423 117 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RNU6-884P-201ENST00000363889 107 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RNU1-100P-201ENST00000365255 165 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 MIR634-201ENST00000385208 97 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 ANAPC10P1-201ENST00000395991 556 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 MIR888-201ENST00000401186 77 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC244035.1-201ENST00000430042 390 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC010153.1-201ENST00000432862 727 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 RPS15AP27-201ENST00000449183 343 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC013267.1-201ENST00000458227 267 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RPL31P41-201ENST00000477967 372 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RN7SL297P-201ENST00000483161 293 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RPL36AP51-201ENST00000487216 318 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 MRPS36P2-201ENST00000512569 299 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC096725.1-201ENST00000514266 313 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 RNA5SP290-201ENST00000517133 127 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 MTATP6P15-201ENST00000527233 835 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AP000907.2-201ENST00000530827 353 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC093012.1-202ENST00000549403 582 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC128657.1-201ENST00000549459 145 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AL354943.1-201ENST00000572103 781 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AL355877.2-201ENST00000603670 358 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC239868.4-201ENST00000608318 671 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC008498.1-201ENST00000613012 531 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC068787.1-201ENST00000623908 691 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 AC091965.5-201ENST00000624785 342 ntBASIC2.62□□□□□ -1.99
VPS35Q96QK1 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS35Q96QK1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS35Q96QK1 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS35Q96QK1 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS35Q96QK1 CR848007.1-201ENST00000442354 1699 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 SNORD113-6-201ENST00000363345 75 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 Y_RNA.302-201ENST00000364997 102 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 RNU6-253P-201ENST00000384730 105 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 MIR34A-201ENST00000385130 110 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AL359634.1-202ENST00000404721 284 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 RNU2-52P-201ENST00000410680 190 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 VPS26BP1-201ENST00000417155 755 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 BTF3L4P3-201ENST00000418879 476 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC098614.2-201ENST00000426040 255 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 RPL7P36-201ENST00000444633 681 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 Z73417.1-201ENST00000447373 778 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 RPL26P9-201ENST00000457466 433 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 MRPS17P3-201ENST00000465453 385 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 RPS29P20-201ENST00000489592 171 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 RNU1-103P-201ENST00000516502 125 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC026241.1-201ENST00000517873 2142 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 AC005498.1-201ENST00000592125 465 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 DPPA3P3-201ENST00000603842 430 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 AP003485.2-201ENST00000623636 610 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS35Q96QK1 MAPK10-266ENST00000641066 6555 ntBASIC2.61□□□□□ -1.99
VPS35Q96QK1 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS35Q96QK1 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS35Q96QK1 Y_RNA.18-201ENST00000362461 102 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 RNU5A-8P-201ENST00000364102 114 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 SNORA72.3-201ENST00000365074 132 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 Y_RNA.510-201ENST00000384511 114 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 RPL17P12-201ENST00000413391 526 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 RPLP0P7-201ENST00000416050 667 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 AL358075.3-201ENST00000426289 226 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 ARL5AP4-201ENST00000430731 512 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 MRPL50P4-201ENST00000446432 475 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 OR6C5P-201ENST00000452388 923 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AL109933.2-201ENST00000452651 260 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 RNU6-64P-201ENST00000517119 105 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC100870.1-201ENST00000522035 505 ntBASIC2.6□□□□□ -1.99
VPS35Q96QK1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS35Q96QK1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms