Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC104454.1-201ENST00000421341 1401 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 OSTCP8-201ENST00000445117 448 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 PAXBP1P1-201ENST00000449315 447 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC090888.2-201ENST00000559765 1144 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 BNIP3P23-201ENST00000599655 511 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC107214.2-201ENST00000608204 634 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 AC010329.5-201ENST00000623497 2174 ntBASIC2.72□□□□□ -1.97
VPS39Q96JC1 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.72□□□□□ -1.97
VPS39Q96JC1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
VPS39Q96JC1 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL359693.1-201ENST00000614959 2407 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 MTCO1P17-201ENST00000411522 491 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC098592.1-201ENST00000419352 333 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 MTCO3P30-201ENST00000426425 670 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC112220.1-201ENST00000434628 355 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL008629.1-201ENST00000438615 184 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 COX6CP12-201ENST00000446748 202 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 RNU7-26P-201ENST00000458980 63 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 MTND2P14-201ENST00000482139 351 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 RPS15AP36-201ENST00000492022 382 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS39Q96JC1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 RNA5SP290-201ENST00000517133 127 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC023824.2-201ENST00000566185 400 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 MIR4658-201ENST00000584344 65 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 VN1R92P-201ENST00000598511 928 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 BCRP9-201ENST00000605312 388 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 RNU6-88P-201ENST00000606801 100 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL031667.3-201ENST00000620124 655 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 AP000676.3-201ENST00000623299 569 ntBASIC2.71□□□□□ -1.98
VPS39Q96JC1 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS39Q96JC1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.71□□□□□ -1.98
VPS39Q96JC1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
VPS39Q96JC1 Y_RNA.302-201ENST00000364997 102 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 SNORA18.3-201ENST00000384122 132 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 UBA52P6-201ENST00000399822 382 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AL035407.1-201ENST00000429211 571 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 MED14P1-201ENST00000430517 648 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 ST13P20-201ENST00000447996 1065 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AP000852.1-201ENST00000472460 573 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC090525.1-201ENST00000479116 478 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC093809.1-201ENST00000509155 340 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 RNU1-104P-201ENST00000517280 175 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC087276.1-201ENST00000529659 480 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AP000403.1-201ENST00000603349 851 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 OR10AB1P-201ENST00000609613 938 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AL449363.1-201ENST00000617815 186 ntBASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS39Q96JC1 AC093536.2-201ENST00000565257 1406 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 SNORA44-201ENST00000384584 132 ntBASIC2.69□□□□□ -1.98
VPS39Q96JC1 RNU6-253P-201ENST00000384730 105 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms