Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL117187.1-201ENST00000555482 181 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MIR3149-201ENST00000584629 83 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 MIR4424-201ENST00000585257 86 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC020914.4-201ENST00000597690 277 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC007938.3-201ENST00000604965 623 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC245389.1-201ENST00000605141 529 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC140113.4-201ENST00000622087 222 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 AC244517.12-201ENST00000623581 663 ntBASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.2□□□□□ -1.74
CLIP3Q96DZ5 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MTND4P14-201ENST00000435799 1354 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.167-201ENST00000363735 109 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.193-201ENST00000363979 102 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.452-201ENST00000384202 108 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 Z98941.1-201ENST00000407764 100 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MIR548K-201ENST00000408406 116 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MIR548F4-201ENST00000408515 105 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC009310.1-201ENST00000414414 451 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC004975.1-201ENST00000428733 208 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MTCYBP9-201ENST00000431021 303 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 RPL9P32-201ENST00000464118 620 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 UQCRHP4-201ENST00000471686 272 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 RN7SL812P-201ENST00000493791 279 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC093303.1-201ENST00000514549 295 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MRPL49P2-201ENST00000521066 465 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 OR5B10P-201ENST00000532869 642 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 NCAPGP2-201ENST00000557911 754 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC110588.1-201ENST00000559699 137 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 HSPE1P5-201ENST00000561489 272 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC004817.2-201ENST00000561794 651 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MIR3942-201ENST00000585264 109 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AL020997.2-201ENST00000602607 184 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AL355598.1-201ENST00000604169 202 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 CTHRC1P1-201ENST00000605383 469 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AL121992.2-201ENST00000606262 256 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AL442067.1-201ENST00000613261 223 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MIR4727-201ENST00000622232 55 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC091905.2-201ENST00000623143 306 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 AC140479.6-201ENST00000633535 357 ntBASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.19□□□□□ -1.74
CLIP3Q96DZ5 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AL139276.1-201ENST00000311910 1001 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 Y_RNA.187-201ENST00000363918 113 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RNU6-188P-201ENST00000364207 107 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RNU6-505P-201ENST00000384427 107 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 SNORA70C-201ENST00000384538 135 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RNU6-903P-201ENST00000391270 109 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RPS26P8-201ENST00000393490 348 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 Z74021.1-201ENST00000423610 407 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 HMGB3P11-201ENST00000440127 604 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 HMGB3P22-202ENST00000451823 572 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RPL7L1P8-201ENST00000469911 741 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AC126389.1-201ENST00000477436 290 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RPL31P60-201ENST00000478450 367 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 SNORA70.14-201ENST00000516205 110 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RNA5SP73-201ENST00000516744 108 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 RNU6-1088P-201ENST00000516850 104 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AP006587.4-201ENST00000526053 529 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 AL589994.2-201ENST00000621124 579 ntBASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CLIP3Q96DZ5 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms