Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP001646.1-201ENST00000527936 915 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AP000907.2-201ENST00000530827 353 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC013828.2-201ENST00000532487 235 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AL359212.1-201ENST00000556608 614 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC234778.2-201ENST00000566241 354 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC021171.1-201ENST00000603137 706 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 DPPA3P3-201ENST00000603842 430 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC009974.1-201ENST00000608881 455 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 MIR7843-201ENST00000622274 79 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC068057.2-201ENST00000624047 895 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 MTND5P29-201ENST00000458676 1807 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 AC092593.1-201ENST00000515413 1815 ntBASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HDDC3Q8N4P3 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 RNU6-1167P-201ENST00000363227 94 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 RNU6-278P-201ENST00000390945 109 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC119751.3-201ENST00000399720 670 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AL512633.1-201ENST00000399931 655 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 ELOCP14-201ENST00000428070 331 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 MED14P1-201ENST00000430517 648 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AL445687.1-201ENST00000439946 251 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 ELOCP7-201ENST00000439968 331 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AP000936.2-201ENST00000447151 681 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 CECR9-201ENST00000453421 199 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC117522.3-201ENST00000507974 584 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 MIR3908-201ENST00000579798 126 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 ZNF861P-201ENST00000588126 639 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HDDC3Q8N4P3 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MIR504-201ENST00000385065 83 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 RNU6-750P-201ENST00000390946 107 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 NDUFS5P4-201ENST00000412983 318 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MTND1P28-201ENST00000435623 950 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MTATP6P30-201ENST00000443540 664 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 EIF4EP3-201ENST00000498782 656 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC091951.3-201ENST00000504093 246 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 SCARNA17.1-201ENST00000516211 143 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 SCARNA17.2-201ENST00000516334 143 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MTCO2P15-201ENST00000532655 656 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 DUXAP1-201ENST00000556632 463 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MTND4P33-201ENST00000556706 766 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MTND1P8-201ENST00000571424 950 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC136618.2-201ENST00000575091 400 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 MIR544B-201ENST00000582372 78 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 SCARNA17.4-201ENST00000614296 143 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC064859.1-201ENST00000624741 174 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC243829.7-201ENST00000633081 225 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 AC006927.4-201ENST00000639187 543 ntBASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HDDC3Q8N4P3 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 FAM133CP-201ENST00000332869 704 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 OR56A5-201ENST00000340110 738 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 U8.2-201ENST00000363156 134 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 U3.12-201ENST00000364498 214 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP88-201ENST00000365560 109 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL359634.1-202ENST00000404721 284 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 RNA5SP21-201ENST00000410917 96 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AC096649.2-201ENST00000416186 393 ntBASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.76□□□□□ -1.97
HDDC3Q8N4P3 AL445669.1-201ENST00000426743 755 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms