Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC092794.2-201ENST00000620933 563 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 SNORA50A-202ENST00000629536 136 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 AC121333.1-201ENST00000567488 2709 ntBASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC28AQ8IWP9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC28AQ8IWP9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RNA5SP123-201ENST00000363244 119 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 U3.12-201ENST00000364498 214 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RNA5SP219-201ENST00000390940 113 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 SPTLC1P2-201ENST00000407089 121 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 MIR1178-201ENST00000408396 91 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RN7SKP267-201ENST00000410381 285 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 COX6B1P1-201ENST00000415962 213 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC073063.1-201ENST00000434352 607 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 PRPS1P1-201ENST00000445305 876 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 MTND5P20-201ENST00000448677 143 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RPL12P25-201ENST00000455592 494 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 DYNLL1P5-201ENST00000467158 270 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RPL21P93-201ENST00000480465 489 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC092185.1-201ENST00000491371 97 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 HMGB1P30-201ENST00000492455 606 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC022493.1-201ENST00000492984 337 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC079140.5-201ENST00000507882 310 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC112206.3-201ENST00000514578 389 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-1314P-201ENST00000517139 104 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RPL7P20-201ENST00000520308 745 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 HIGD1AP1-201ENST00000550979 275 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC037471.2-201ENST00000564941 598 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC012119.1-201ENST00000603184 222 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 HSPE1P7-201ENST00000604681 321 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC211433.2-201ENST00000608433 387 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC093913.1-201ENST00000614178 329 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 AC103705.1-201ENST00000619013 241 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 MTND4P35-201ENST00000604257 1375 ntBASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC28AQ8IWP9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 SRP72P2-201ENST00000344851 1979 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 SDAD1P1-202ENST00000524156 2051 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 SNORA71.2-201ENST00000364941 134 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-867P-201ENST00000364956 107 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 Y_RNA.373-201ENST00000365600 103 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-1179P-201ENST00000384667 107 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RPS4XP7-201ENST00000406274 780 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RPL7P10-201ENST00000417407 739 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 MYL8P-204ENST00000431574 518 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 NEK4P1-201ENST00000433383 879 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AURKAPS2-201ENST00000454983 333 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RN7SL177P-201ENST00000476596 299 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 SCARNA22-201ENST00000503991 125 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC114786.4-201ENST00000508771 728 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 Y_RNA.702-201ENST00000516843 96 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-928P-201ENST00000516876 104 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC009902.1-201ENST00000519351 183 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 IGHV3-76-201ENST00000522465 295 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC090115.3-201ENST00000553218 849 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 PSMA3P-201ENST00000555485 635 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC073539.2-201ENST00000597113 165 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 VN1R80P-201ENST00000597126 338 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL355598.1-201ENST00000604169 202 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL355073.2-201ENST00000612106 557 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AC068870.2-201ENST00000620635 389 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL136221.1-201ENST00000621449 509 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AP005264.7-201ENST00000625003 745 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL773545.4-201ENST00000637262 310 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 AL513478.4-201ENST00000641636 310 ntBASIC3.45□□□□□ -1.86
CCDC28AQ8IWP9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms