Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DPH3P2-201ENST00000422618 250 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 CR848007.2-201ENST00000424918 787 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC109464.2-201ENST00000510242 943 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 DEFB108D-201ENST00000527787 222 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC136932.1-201ENST00000574771 208 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC055876.5-201ENST00000605667 259 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 SNORD114-21-201ENST00000606412 72 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC009974.1-201ENST00000608881 455 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 MIR6862-1-201ENST00000613016 70 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 MIR6862-2-201ENST00000614755 70 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AC092140.2-201ENST00000618027 521 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC0.58□□□□□ -2.32
LINC00643Q86TS7 ICE2P2-201ENST00000483823 2787 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 AL049641.1-201ENST00000441055 1948 ntBASIC0.58□□□□□ -2.32
LINC00643Q86TS7 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AL391516.1-201ENST00000554380 2449 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 SNORD114-2-201ENST00000363953 78 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 RNA5SP479-201ENST00000364858 117 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 RNU6-31P-201ENST00000384388 108 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 RNU2-36P-201ENST00000410361 191 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 UBE2V1P4-201ENST00000425374 344 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AL135790.2-201ENST00000437701 267 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC097499.1-201ENST00000444277 208 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 COX6CP18-201ENST00000448769 222 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC016724.1-201ENST00000453215 421 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 RPL31P53-201ENST00000457065 348 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC138853.1-201ENST00000503549 823 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC109927.2-201ENST00000506416 303 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 RNU6-1095P-201ENST00000516148 108 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 SNORA25.15-201ENST00000516487 89 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 VBP1-203ENST00000535916 944 ntTSL 2 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC005832.3-201ENST00000537929 631 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.57□□□□□ -2.32
LINC00643Q86TS7 MIR5010-201ENST00000582846 120 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AF230666.2-201ENST00000602328 725 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AP000403.1-201ENST00000603349 851 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AL391597.1-201ENST00000618707 694 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 MTND5P30-201ENST00000452896 1731 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 AC008163.1-202ENST00000636004 2889 ntBASIC0.57□□□□□ -2.32
LINC00643Q86TS7 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 RNU4-31P-201ENST00000384211 141 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 MIR100-201ENST00000385259 80 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 RNU6-174P-201ENST00000410406 106 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC096649.2-201ENST00000416186 393 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 RPL36AP36-201ENST00000418616 301 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL160175.1-201ENST00000428124 247 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL592447.1-201ENST00000447592 540 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL353705.4-201ENST00000449661 238 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 RPL30P7-201ENST00000479312 323 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC103851.1-201ENST00000506833 274 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 RNA5SP404-201ENST00000517118 132 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AP006587.4-201ENST00000526053 529 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL731537.2-201ENST00000561565 951 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 BNIP3P4-201ENST00000604946 565 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL121652.1-201ENST00000608851 448 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC009233.1-201ENST00000616477 371 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL121890.5-201ENST00000620848 304 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AP003485.2-201ENST00000623636 610 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.56□□□□□ -2.32
LINC00643Q86TS7 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
LINC00643Q86TS7 ZNF680P1-201ENST00000436625 1469 ntBASIC0.55□□□□□ -2.32
LINC00643Q86TS7 RNA5SP327-201ENST00000362494 101 ntBASIC0.55□□□□□ -2.32
LINC00643Q86TS7 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms