Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SOX4Q06945 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.78□□□□□ -1.64
SOX4Q06945 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SOX4Q06945 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
SOX4Q06945 Y_RNA.462-201ENST00000384268 102 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 Y_RNA.471-201ENST00000384312 102 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 MIR548H3-201ENST00000408771 118 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 RNA5SP56-201ENST00000410277 118 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 MTCO3P19-201ENST00000415864 321 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.78□□□□□ -1.64
SOX4Q06945 RPL36AP10-201ENST00000421785 322 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AC006946.1-201ENST00000429106 328 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AC090774.1-201ENST00000435925 246 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 RN7SL303P-201ENST00000469773 251 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 RPS27AP13-201ENST00000498403 237 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.78□□□□□ -1.64
SOX4Q06945 SNORA31.3-201ENST00000516029 96 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.78□□□□□ -1.64
SOX4Q06945 AC109329.1-201ENST00000518744 317 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 PARP1P2-201ENST00000556806 195 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.78□□□□□ -1.64
SOX4Q06945 MIR8069-1-201ENST00000616627 86 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 MIR8069-2-201ENST00000621412 86 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.78□□□□□ -1.64
SOX4Q06945 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.78□□□□□ -1.64
SOX4Q06945 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.78□□□□□ -1.64
SOX4Q06945 AC083843.3-201ENST00000623679 2186 ntBASIC4.78□□□□□ -1.64
SOX4Q06945 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SOX4Q06945 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SOX4Q06945 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.78□□□□□ -1.65
SOX4Q06945 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 A2MP1-204ENST00000566278 4130 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 Y_RNA.105-201ENST00000363182 111 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 Y_RNA.150-201ENST00000363562 102 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 RNU6-611P-201ENST00000384276 104 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 Y_RNA.539-201ENST00000384635 107 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 MIR578-201ENST00000384828 96 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 SAR1AP2-201ENST00000392696 594 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 RNU6-325P-201ENST00000411132 105 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 MTATP6P29-201ENST00000415057 132 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 UBE2D3P2-201ENST00000424409 445 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 ELOCP18-201ENST00000434209 337 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.77□□□□□ -1.65
SOX4Q06945 AL121871.1-201ENST00000443413 436 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 AL360271.2-201ENST00000447710 161 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 AC113155.1-201ENST00000511141 769 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.77□□□□□ -1.65
SOX4Q06945 CYCSP29-201ENST00000533731 318 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.77□□□□□ -1.65
SOX4Q06945 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX4Q06945 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.77□□□□□ -1.65
SOX4Q06945 ATP5J2P6-201ENST00000565203 266 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 AC004584.2-201ENST00000570407 410 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 RPL23AP87-202ENST00000573039 466 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 SNORD39.4-201ENST00000620099 78 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 FP236240.3-201ENST00000623061 327 ntBASIC4.77□□□□□ -1.65
SOX4Q06945 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
SOX4Q06945 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX4Q06945 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.77□□□□□ -1.65
SOX4Q06945 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SOX4Q06945 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
SOX4Q06945 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX4Q06945 AC005183.1-201ENST00000603687 1979 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 Y_RNA.29-201ENST00000362570 113 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 Y_RNA.183-201ENST00000363882 113 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
SOX4Q06945 RNU1-63P-201ENST00000383902 164 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SOX4Q06945 RNU2-14P-201ENST00000411053 191 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 RPL21P38-201ENST00000418090 167 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 PPP1R11P2-201ENST00000423543 382 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC011998.1-201ENST00000433403 117 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC004383.1-201ENST00000438135 289 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 RPL23AP52-201ENST00000439311 478 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX4Q06945 MED28P2-201ENST00000475771 317 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 NDUFB4P9-201ENST00000511646 388 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 RNU6-914P-201ENST00000516749 109 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 AC130289.1-201ENST00000577321 73 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC233702.9-201ENST00000581528 203 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC091178.1-203ENST00000584586 279 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AL355877.2-201ENST00000603670 358 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC079587.1-201ENST00000603846 277 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AC113403.1-201ENST00000604910 193 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 ARF4P1-201ENST00000605447 541 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms