Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RNA5SP310-201ENST00000459084 116 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 CENPBD1P1-201ENST00000464061 469 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 RPL32P34-201ENST00000486380 400 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HDAC4P56524 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.52□□□□□ -1.85
HDAC4P56524 FCF1P8-201ENST00000510322 597 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AL359273.1-201ENST00000510918 627 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 SNORA70.16-201ENST00000516390 95 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 RNU6-506P-201ENST00000516553 94 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 Vault.3-201ENST00000516676 95 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 RNU6-64P-201ENST00000517119 105 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 RNU6-840P-201ENST00000517275 65 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AC107934.2-201ENST00000518653 310 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HDAC4P56524 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.52□□□□□ -1.85
HDAC4P56524 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.52□□□□□ -1.85
HDAC4P56524 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.52□□□□□ -1.85
HDAC4P56524 AC245014.2-201ENST00000603689 287 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AL136363.1-201ENST00000605349 337 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AC246785.4-201ENST00000605374 287 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 AC092954.2-201ENST00000609103 430 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.52□□□□□ -1.85
HDAC4P56524 AC006338.1-201ENST00000618453 749 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 OR5H6-203ENST00000642105 978 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 MTCO1P12-201ENST00000414273 1543 ntBASIC3.52□□□□□ -1.85
HDAC4P56524 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HDAC4P56524 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.52□□□□□ -1.85
HDAC4P56524 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 AL049781.1-201ENST00000623195 3585 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HDAC4P56524 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 RNU6-181P-201ENST00000363225 107 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 RNU6-1103P-201ENST00000384150 107 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HDAC4P56524 RNA5SP107-201ENST00000411358 122 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 NDUFB4P5-201ENST00000415445 361 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC137499.1-201ENST00000427602 88 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 BX679664.1-201ENST00000434429 253 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.51□□□□□ -1.85
HDAC4P56524 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC008155.2-201ENST00000464337 397 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 RN7SL293P-201ENST00000481765 281 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 RPL21P13-201ENST00000488305 481 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC093663.1-201ENST00000497190 394 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC114797.1-201ENST00000514003 728 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 RNU6-445P-201ENST00000516949 107 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC124947.2-202ENST00000552735 133 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.51□□□□□ -1.85
HDAC4P56524 AC105224.1-201ENST00000587055 421 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AF038458.1-201ENST00000588406 262 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.51□□□□□ -1.85
HDAC4P56524 AL391646.1-201ENST00000603860 190 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC007684.1-201ENST00000609671 477 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AC124864.2-201ENST00000624736 186 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 AL157786.1-207ENST00000627771 695 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 U6.105-201ENST00000637379 88 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 LRRC77P-213ENST00000637727 880 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDAC4P56524 CUL1P1-201ENST00000509510 2425 ntBASIC3.51□□□□□ -1.85
HDAC4P56524 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.5□□□□□ -1.85
HDAC4P56524 RNU5A-1-201ENST00000362698 116 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 Y_RNA.159-201ENST00000363674 87 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 RNU6-39P-201ENST00000384344 107 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 Y_RNA.554-201ENST00000384672 102 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AC110754.1-201ENST00000399740 601 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 CALM2P3-201ENST00000400429 449 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 MIR548F1-201ENST00000408667 84 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 MIR1290-201ENST00000408735 78 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 RNU6-648P-201ENST00000410190 107 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AL356968.1-201ENST00000416622 474 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 ELOCP4-201ENST00000420090 333 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.5□□□□□ -1.85
HDAC4P56524 AC133104.1-201ENST00000429100 218 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AL136380.1-201ENST00000447970 162 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.5□□□□□ -1.85
HDAC4P56524 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.5□□□□□ -1.85
HDAC4P56524 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.5□□□□□ -1.85
HDAC4P56524 RPS3AP14-201ENST00000483907 780 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.5□□□□□ -1.85
HDAC4P56524 AC090572.1-201ENST00000519251 160 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AC100870.1-201ENST00000522035 505 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.5□□□□□ -1.85
HDAC4P56524 AC011979.2-201ENST00000527568 352 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 FAM92A1P1-201ENST00000528023 890 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HDAC4P56524 AC123904.3-201ENST00000547218 814 ntBASIC3.5□□□□□ -1.85
HDAC4P56524 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms