Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-198P-201ENST00000384258 104 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 MIR325-201ENST00000385260 98 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RN7SKP223-201ENST00000410582 62 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNA5SP489-201ENST00000410986 109 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AL513331.1-201ENST00000411908 397 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXA1P55317 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 AC018630.2-202ENST00000422992 927 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 NDUFB4P7-201ENST00000423198 363 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 PPP1R11P2-201ENST00000423543 382 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 BX119904.4-201ENST00000424402 301 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 TAAR7P-201ENST00000436141 242 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 ARPC3P1-201ENST00000437218 533 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RNF2P1-201ENST00000442955 1010 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 AC009237.8-201ENST00000445492 379 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AL358794.1-201ENST00000445689 381 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 MTCO2P25-201ENST00000447065 681 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 snoU13.28-201ENST00000459235 104 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 snoU13.26-201ENST00000459452 105 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AL135752.1-201ENST00000479477 471 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 FAM172BP-201ENST00000487497 1089 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 RPS29P21-201ENST00000496272 170 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.86□□□□□ -2.11
FOXA1P55317 RNU6-928P-201ENST00000516876 104 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 DEFB131D-201ENST00000526803 184 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 COX6CP5-201ENST00000527162 228 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXA1P55317 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 AL049838.1-201ENST00000563647 981 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AC009127.3-201ENST00000570531 403 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 RPS15AP11-201ENST00000594193 385 ntBASIC1.86□□□□□ -2.11
FOXA1P55317 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.86□□□□□ -2.11
FOXA1P55317 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.86□□□□□ -2.11
FOXA1P55317 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
FOXA1P55317 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 RNU5E-8P-201ENST00000363502 116 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 MIR514A1-201ENST00000385133 98 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXA1P55317 RPL23AP29-201ENST00000397284 453 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 RNU6-193P-201ENST00000410977 107 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 EIF1AXP1-201ENST00000419267 435 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA1P55317 USP9YP11-201ENST00000427537 717 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA1P55317 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA1P55317 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA1P55317 SNORD121B-201ENST00000458838 81 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 snoU13.15-201ENST00000459407 104 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 RPL30P9-201ENST00000465586 330 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AC090096.1-201ENST00000489168 390 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA1P55317 AC113155.1-201ENST00000511141 769 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 RNU6-150P-201ENST00000516237 95 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 RNU6-1256P-201ENST00000516539 103 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AP000873.5-201ENST00000533906 236 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 OR6C7P-201ENST00000547875 934 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 OR11H5P-201ENST00000554039 926 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA1P55317 CYCSP2-201ENST00000558168 301 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC1.85□□□□□ -2.11
FOXA1P55317 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA1P55317 AL356280.1-201ENST00000603614 379 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 AC068313.1-201ENST00000604028 1008 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA1P55317 AC004852.3-201ENST00000614131 326 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
FOXA1P55317 MIR7843-201ENST00000622274 79 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.85□□□□□ -2.11
FOXA1P55317 AC073308.1-201ENST00000623696 305 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXA1P55317 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.85□□□□□ -2.11
FOXA1P55317 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 OR5H6-203ENST00000642105 978 ntBASIC1.85□□□□□ -2.11
FOXA1P55317 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.85□□□□□ -2.11
FOXA1P55317 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXA1P55317 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA1P55317 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
FOXA1P55317 AL390862.1-201ENST00000635467 1469 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AL596028.1-201ENST00000326971 197 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA1P55317 MIR767-201ENST00000390228 109 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 RNA5SP425-201ENST00000410336 112 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXA1P55317 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.84□□□□□ -2.11
FOXA1P55317 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.84□□□□□ -2.11
FOXA1P55317 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms