Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 Y_RNA.576-201ENST00000384781 102 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 SOD2P1-201ENST00000396543 562 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL078595.1-201ENST00000404458 226 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RPL21P65-201ENST00000406094 466 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RN7SKP140-201ENST00000411196 284 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC244505.4-201ENST00000434905 287 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 SEPT14P3-201ENST00000439401 183 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RPL21P2-201ENST00000440049 481 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 SSXP5-201ENST00000443473 287 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL732372.2-207ENST00000445840 183 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 TPT1P12-201ENST00000448968 492 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 FABP5P13-201ENST00000452144 328 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 SEPT14P2-201ENST00000453405 183 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 RNU6-261P-201ENST00000459506 102 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RN7SL432P-201ENST00000484057 298 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 EIF4EP3-201ENST00000498782 656 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC074344.1-201ENST00000512823 224 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 SEPT14P4-201ENST00000513445 186 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 MIR2116-201ENST00000517221 80 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AC245166.1-201ENST00000521012 253 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 FO082796.1-201ENST00000523795 183 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 PSMA2P1-201ENST00000526365 646 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AP005435.4-201ENST00000529514 284 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 RPL23AP84-201ENST00000571193 464 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AC067852.3-201ENST00000589177 561 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC106900.2-201ENST00000604994 317 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL355810.1-201ENST00000614629 552 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 AL445567.2-201ENST00000618935 498 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 AC011155.2-201ENST00000623202 216 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.02□□□□□ -1.93
HOXA1P49639 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 OR52H1-202ENST00000641796 1061 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
HOXA1P49639 CKAP2P1-201ENST00000555477 2049 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXA1P49639 ASNSP3-201ENST00000451989 1306 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 NACAP2-201ENST00000318548 624 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC073343.1-201ENST00000328239 651 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 RNU6-960P-201ENST00000364056 120 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 Y_RNA.255-201ENST00000364581 97 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 RNU6-867P-201ENST00000364956 107 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 SNORA51.4-201ENST00000364993 124 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 SNORD115-7-201ENST00000365306 82 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 U8.9-201ENST00000365667 134 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 RNU6-14P-201ENST00000384630 106 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 SNORA26.7-201ENST00000391288 122 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA1P49639 AL139397.2-201ENST00000404529 772 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL354719.1-201ENST00000406535 843 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL139413.1-201ENST00000421309 217 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC091390.3-201ENST00000426478 338 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA1P49639 RPL21P112-201ENST00000434403 463 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA1P49639 NEFMP1-201ENST00000443423 1006 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC020550.1-201ENST00000447385 163 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC146507.2-201ENST00000460608 476 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AL163973.1-201ENST00000484753 577 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC098799.2-201ENST00000509466 868 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 RNU6-358P-201ENST00000516564 75 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 RN7SKP219-201ENST00000516825 296 ntBASIC3.01□□□□□ -1.93
HOXA1P49639 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.01□□□□□ -1.93
HOXA1P49639 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXA1P49639 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms