Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF519P1-201ENST00000449011 1626 ntBASIC1.52□□□□□ -2.17
CUX1P39880 RNU6-716P-201ENST00000365621 103 ntBASIC1.52□□□□□ -2.17
CUX1P39880 MTND4P11-201ENST00000417020 1058 ntBASIC1.52□□□□□ -2.17
CUX1P39880 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.52□□□□□ -2.17
CUX1P39880 RPL30P4-201ENST00000429309 333 ntBASIC1.52□□□□□ -2.17
CUX1P39880 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC1.52□□□□□ -2.17
CUX1P39880 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC1.52□□□□□ -2.17
CUX1P39880 PRELID3BP4-201ENST00000515476 571 ntBASIC1.52□□□□□ -2.17
CUX1P39880 SNORA31.20-201ENST00000517111 133 ntBASIC1.52□□□□□ -2.17
CUX1P39880 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.52□□□□□ -2.17
CUX1P39880 AL590282.1-201ENST00000610379 1136 ntBASIC1.52□□□□□ -2.17
CUX1P39880 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.52□□□□□ -2.17
CUX1P39880 HAUS6P2-201ENST00000433254 2404 ntBASIC1.52□□□□□ -2.17
CUX1P39880 MIR330-201ENST00000362196 94 ntBASIC1.51□□□□□ -2.17
CUX1P39880 RNU6-629P-201ENST00000384061 103 ntBASIC1.51□□□□□ -2.17
CUX1P39880 AC093716.1-201ENST00000435923 377 ntBASIC1.51□□□□□ -2.17
CUX1P39880 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.51□□□□□ -2.17
CUX1P39880 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC1.51□□□□□ -2.17
CUX1P39880 AL512605.2-201ENST00000592972 256 ntBASIC1.51□□□□□ -2.17
CUX1P39880 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC1.51□□□□□ -2.17
CUX1P39880 AL096840.1-201ENST00000603287 93 ntBASIC1.51□□□□□ -2.17
CUX1P39880 AC009902.3-201ENST00000606235 2172 ntBASIC1.51□□□□□ -2.17
CUX1P39880 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
CUX1P39880 RN7SKP200-201ENST00000410564 320 ntBASIC1.5□□□□□ -2.17
CUX1P39880 FCF1P2-201ENST00000415284 583 ntBASIC1.5□□□□□ -2.17
CUX1P39880 HMGN2P10-201ENST00000448085 265 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC078857.1-201ENST00000469870 667 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC036111.3-201ENST00000526389 112 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.5□□□□□ -2.17
CUX1P39880 AC005332.10-201ENST00000612725 619 ntBASIC1.5□□□□□ -2.17
CUX1P39880 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC1.5□□□□□ -2.17
CUX1P39880 MIR924-201ENST00000638017 53 ntBASIC1.5□□□□□ -2.17
CUX1P39880 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CUX1P39880 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
CUX1P39880 AC018630.2-201ENST00000534866 2403 ntBASIC1.5□□□□□ -2.17
CUX1P39880 SNORD14B-201ENST00000364533 90 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC092648.1-201ENST00000425870 423 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC004941.2-201ENST00000427009 228 ntBASIC1.5□□□□□ -2.17
CUX1P39880 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.5□□□□□ -2.17
CUX1P39880 AL357134.1-201ENST00000445848 426 ntBASIC1.5□□□□□ -2.17
CUX1P39880 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC1.5□□□□□ -2.17
CUX1P39880 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC1.5□□□□□ -2.17
CUX1P39880 MRPS17P9-201ENST00000511924 393 ntBASIC1.5□□□□□ -2.17
CUX1P39880 RN7SKP277-201ENST00000516895 283 ntBASIC1.5□□□□□ -2.17
CUX1P39880 AC010487.4-201ENST00000637027 61 ntBASIC1.5□□□□□ -2.17
CUX1P39880 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
CUX1P39880 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CUX1P39880 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.49□□□□□ -2.17
CUX1P39880 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.49□□□□□ -2.17
CUX1P39880 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CUX1P39880 AC022662.1-201ENST00000580252 331 ntBASIC1.49□□□□□ -2.17
CUX1P39880 AC084373.1-201ENST00000603311 235 ntBASIC1.49□□□□□ -2.17
CUX1P39880 AC107214.2-201ENST00000608204 634 ntBASIC1.49□□□□□ -2.17
CUX1P39880 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.49□□□□□ -2.17
CUX1P39880 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC1.49□□□□□ -2.17
CUX1P39880 MTND4P31-201ENST00000425607 1343 ntBASIC1.48□□□□□ -2.17
CUX1P39880 SNORD114-23-201ENST00000363536 72 ntBASIC1.48□□□□□ -2.17
CUX1P39880 UBE2V1P9-201ENST00000414760 368 ntBASIC1.48□□□□□ -2.17
CUX1P39880 MTCO3P46-201ENST00000425787 232 ntBASIC1.48□□□□□ -2.17
CUX1P39880 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.48□□□□□ -2.17
CUX1P39880 AC004022.1-201ENST00000447766 1066 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AC097493.1-201ENST00000463958 372 ntBASIC1.48□□□□□ -2.17
CUX1P39880 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CUX1P39880 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.48□□□□□ -2.17
CUX1P39880 AC008676.3-201ENST00000521237 435 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC1.48□□□□□ -2.17
CUX1P39880 AC022880.1-201ENST00000534017 973 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.48□□□□□ -2.17
CUX1P39880 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CUX1P39880 AGGF1P5-201ENST00000567900 919 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AC090970.3-201ENST00000612566 866 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AC011472.4-201ENST00000615848 491 ntBASIC1.48□□□□□ -2.17
CUX1P39880 AC020923.1-201ENST00000624021 917 ntBASIC1.48□□□□□ -2.17
CUX1P39880 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
CUX1P39880 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.47□□□□□ -2.17
CUX1P39880 RNA5SP354-201ENST00000391247 136 ntBASIC1.47□□□□□ -2.17
CUX1P39880 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.47□□□□□ -2.17
CUX1P39880 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.47□□□□□ -2.17
CUX1P39880 RPS29P28-201ENST00000446439 141 ntBASIC1.47□□□□□ -2.17
CUX1P39880 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CUX1P39880 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC1.47□□□□□ -2.17
CUX1P39880 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC1.47□□□□□ -2.17
CUX1P39880 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.47□□□□□ -2.17
CUX1P39880 AP003717.3-201ENST00000544832 1180 ntBASIC1.47□□□□□ -2.17
CUX1P39880 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.47□□□□□ -2.17
CUX1P39880 HSBP1P1-201ENST00000555205 166 ntBASIC1.47□□□□□ -2.17
CUX1P39880 NIFKP8-201ENST00000560500 874 ntBASIC1.47□□□□□ -2.17
CUX1P39880 AC090616.3-201ENST00000582184 217 ntBASIC1.47□□□□□ -2.17
CUX1P39880 AC012443.1-201ENST00000605605 231 ntBASIC1.47□□□□□ -2.17
CUX1P39880 AC103810.9-201ENST00000606688 112 ntBASIC1.47□□□□□ -2.17
CUX1P39880 SDR42E1P2-201ENST00000614861 481 ntBASIC1.47□□□□□ -2.17
CUX1P39880 SDR42E1P4-201ENST00000620894 481 ntBASIC1.47□□□□□ -2.17
CUX1P39880 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
CUX1P39880 MIR676-201ENST00000390702 67 ntBASIC1.46□□□□□ -2.18
CUX1P39880 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
CUX1P39880 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.46□□□□□ -2.18
CUX1P39880 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.46□□□□□ -2.18
CUX1P39880 AC096751.1-202ENST00000502691 1067 ntBASIC1.46□□□□□ -2.18
CUX1P39880 AC020699.1-201ENST00000505161 445 ntBASIC1.46□□□□□ -2.18
CUX1P39880 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms