Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP003122.4-201ENST00000530980 758 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 SNRPGP16-201ENST00000533275 226 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC9P31274 AC012182.1-201ENST00000570133 895 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 MTND1P15-201ENST00000579262 949 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 MIR3690-201ENST00000580266 75 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 COX6CP3-201ENST00000580869 223 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 AC090425.2-201ENST00000608818 501 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 AC087241.4-201ENST00000612441 480 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 AC108479.2-201ENST00000617314 601 ntBASIC3.5□□□□□ -1.85
HOXC9P31274 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC9P31274 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC9P31274 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 ELF2P3-201ENST00000445099 1506 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXC9P31274 AC108206.1-201ENST00000570186 4159 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC9P31274 RNA5SP289-201ENST00000362332 137 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 SNORD62.1-201ENST00000362541 86 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 RNY4P16-201ENST00000364768 94 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 RNU6-1119P-201ENST00000384349 108 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 MIR518C-201ENST00000384822 101 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AL663109.1-201ENST00000411498 844 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 HMGB1P12-201ENST00000438594 598 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 MTND6P13-201ENST00000443510 523 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AC244505.5-201ENST00000443639 207 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 RPL21P104-201ENST00000464143 478 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 KLF3P2-201ENST00000465138 268 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 SRIP1-201ENST00000489235 288 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 NIPA2P2-201ENST00000496376 1083 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AC135721.1-201ENST00000497954 479 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 SNORA18.6-201ENST00000516792 115 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AP003467.2-201ENST00000520175 319 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 MIR4635-201ENST00000583759 79 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 AC011468.4-201ENST00000603942 409 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 RNU6-87P-201ENST00000607561 108 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AC004908.2-201ENST00000609090 574 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 AC090970.3-201ENST00000612566 866 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC9P31274 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXC9P31274 AL360181.4-201ENST00000621752 134 ntBASIC3.49□□□□□ -1.85
HOXC9P31274 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC9P31274 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC9P31274 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC9P31274 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC9P31274 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC9P31274 RNU6-173P-201ENST00000364215 104 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HOXC9P31274 MRPL42P2-201ENST00000403169 426 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 RPS4XP7-201ENST00000406274 780 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 RNU6-195P-201ENST00000411352 109 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 RNU2-71P-201ENST00000411395 189 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC9P31274 MTCO1P39-201ENST00000426148 480 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC9P31274 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC9P31274 AC024082.2-201ENST00000434771 238 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AL121890.1-201ENST00000435457 205 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AL031667.1-201ENST00000440222 725 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC9P31274 TPTE2P5-203ENST00000458118 728 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AC078785.3-201ENST00000476607 425 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 LARP1BP2-201ENST00000486594 519 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXC9P31274 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC9P31274 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC9P31274 DEFB108D-201ENST00000527787 222 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AP002963.1-201ENST00000530590 184 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC9P31274 AGGF1P4-201ENST00000568249 801 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 MIR3913-1-201ENST00000577744 102 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 SNORD53-201ENST00000579969 78 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC9P31274 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC9P31274 AP001506.1-201ENST00000615444 211 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 MIR6715A-201ENST00000615929 79 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AC091953.2-201ENST00000623979 160 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 AC019226.1-201ENST00000625666 515 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 CTSLP2-204ENST00000629029 392 ntBASIC3.48□□□□□ -1.85
HOXC9P31274 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC9P31274 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
HOXC9P31274 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC9P31274 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
HOXC9P31274 AP001148.1-201ENST00000624124 2359 ntBASIC3.47□□□□□ -1.85
HOXC9P31274 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC9P31274 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC9P31274 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.47□□□□□ -1.85
HOXC9P31274 RNU5E-8P-201ENST00000363502 116 ntBASIC3.47□□□□□ -1.85
HOXC9P31274 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC9P31274 SNORA3.2-201ENST00000408221 125 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms