Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNU6-198P-201ENST00000384258 104 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AL663109.1-201ENST00000411498 844 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXC11O43248 MRPL50P2-201ENST00000416821 482 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MTND3P17-201ENST00000416968 344 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC099548.1-201ENST00000421443 426 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC11O43248 GPR143P-201ENST00000434155 205 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC079781.2-201ENST00000446424 169 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC115115.1-201ENST00000449927 248 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 FABP5P13-201ENST00000452144 328 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MTND3P5-201ENST00000512798 333 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC11O43248 RNA5SP471-201ENST00000516971 106 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 RNU6-430P-201ENST00000517078 107 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MTCO2P4-201ENST00000517968 247 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 NDUFB9P3-201ENST00000521269 501 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC093331.1-201ENST00000521474 169 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.49□□□□□ -1.85
HOXC11O43248 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC11O43248 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXC11O43248 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC11O43248 AL391840.1-201ENST00000571144 367 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MTCYBP33-201ENST00000575007 1130 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC006504.3-201ENST00000586818 523 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXC11O43248 BNIP3P9-201ENST00000603714 553 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AL136363.1-201ENST00000605349 337 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC098614.4-201ENST00000607601 462 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 FTX_3.1-201ENST00000610451 147 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC005332.10-201ENST00000612725 619 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC091834.1-201ENST00000614543 472 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AC009509.4-201ENST00000619202 509 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MIR8057-201ENST00000620957 69 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 AP003122.6-201ENST00000623831 495 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 CEP170P1-201ENST00000502249 4587 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC11O43248 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC11O43248 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC11O43248 AL359693.1-201ENST00000614959 2407 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 FTLP6-201ENST00000355274 422 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RNU6-270P-201ENST00000364131 105 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RNU6-190P-201ENST00000384154 102 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RNU6-14P-201ENST00000384630 106 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 DEFB108C-201ENST00000400154 252 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXC11O43248 RPS12P24-201ENST00000412619 387 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC11O43248 AC016907.1-201ENST00000419483 435 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC133104.1-201ENST00000429100 218 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RPL36AP6-201ENST00000435770 321 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AL031667.1-201ENST00000440222 725 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC104472.2-201ENST00000469035 601 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RPL39P36-201ENST00000490784 156 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.48□□□□□ -1.85
HOXC11O43248 PHBP14-201ENST00000512887 367 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 APOOP4-201ENST00000513530 597 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 SCARNA24.1-201ENST00000516465 137 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RNU6-410P-201ENST00000517006 107 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXC11O43248 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC11O43248 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC11O43248 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXC11O43248 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC11O43248 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC11O43248 AC005951.1-201ENST00000576706 485 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC098848.2-201ENST00000588023 330 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC012493.2-201ENST00000595083 291 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AL589743.7-201ENST00000612637 233 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 AC004852.3-201ENST00000614131 326 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXC11O43248 MTND5P42-201ENST00000637720 498 ntBASIC3.48□□□□□ -1.85
HOXC11O43248 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXC11O43248 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC11O43248 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXC11O43248 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC11O43248 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXC11O43248 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXC11O43248 RNU6-1119P-201ENST00000384349 108 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HOXC11O43248 AL391417.1-201ENST00000404100 426 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 RNU2-68P-201ENST00000410878 191 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXC11O43248 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 MTCO3P5-201ENST00000433620 714 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AL591212.2-201ENST00000433923 257 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 SNRPEP9-201ENST00000436794 238 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXC11O43248 CECR9-201ENST00000453421 199 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 RPL12P25-201ENST00000455592 494 ntBASIC3.47□□□□□ -1.85
HOXC11O43248 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms