Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-193P-201ENST00000410977 107 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC098592.2-201ENST00000413158 265 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC092648.1-201ENST00000425870 423 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC079780.1-201ENST00000428259 207 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AL356867.1-201ENST00000429623 299 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 RPL31P58-201ENST00000469001 379 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AL355297.2-201ENST00000604792 129 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 MIR216A-201ENST00000385063 110 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 RNU6-882P-201ENST00000391025 103 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AL353718.1-201ENST00000451028 517 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 RPS24P6-201ENST00000452670 400 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 RNA5SP310-201ENST00000459084 116 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC092989.1-201ENST00000481235 277 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 PRELID3BP4-201ENST00000515476 571 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AP003717.3-201ENST00000544832 1180 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AL160236.1-201ENST00000556317 195 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AC023824.2-201ENST00000566185 400 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 AL512605.2-201ENST00000592972 256 ntBASIC1.5□□□□□ -2.17
CCDC88BA6NC98 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.5□□□□□ -2.17
CCDC88BA6NC98 RNU2-41P-201ENST00000410991 178 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 RPL21P32-201ENST00000419877 477 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 UBE2D3P2-201ENST00000424409 445 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 CBX3P6-201ENST00000430257 527 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC093155.1-201ENST00000440164 826 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 RPL31P20-201ENST00000449593 360 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AP004371.1-201ENST00000525240 214 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC090525.3-201ENST00000605601 189 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 AC103810.9-201ENST00000606688 112 ntBASIC1.49□□□□□ -2.17
CCDC88BA6NC98 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 MIR4287-201ENST00000579398 78 ntBASIC1.48□□□□□ -2.17
CCDC88BA6NC98 AC012443.1-201ENST00000605605 231 ntBASIC1.48□□□□□ -2.17
CCDC88BA6NC98 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC88BA6NC98 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 RNU6-629P-201ENST00000384061 103 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AL161449.1-201ENST00000414531 1199 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AC009296.1-201ENST00000443146 155 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AC010099.1-201ENST00000455434 375 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AC005908.1-201ENST00000468701 347 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AC008269.2-201ENST00000561915 1105 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 OR1M4P-201ENST00000589199 287 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 BNIP3P7-201ENST00000605641 516 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 SNORD14A-201ENST00000606526 91 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AC007742.2-201ENST00000618226 398 ntBASIC1.47□□□□□ -2.17
CCDC88BA6NC98 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.47□□□□□ -2.17
CCDC88BA6NC98 RNU6-37P-201ENST00000362692 107 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 RNU6-11P-201ENST00000364234 107 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 SNORA1.3-201ENST00000384676 136 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 RNA5SP354-201ENST00000391247 136 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 RPL7P30-201ENST00000420888 709 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC015908.1-201ENST00000478739 476 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC021087.2-201ENST00000504656 1203 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 SNORA31.20-201ENST00000517111 133 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC019131.2-201ENST00000609071 870 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC091304.6-201ENST00000619761 202 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 AC006963.1-201ENST00000624003 1052 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 CCT4P2-201ENST00000233836 1548 ntBASIC1.46□□□□□ -2.18
CCDC88BA6NC98 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 RNA5SP457-201ENST00000363657 124 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 U8.14-201ENST00000390843 143 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 EBAG9P1-201ENST00000418955 543 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 XKRYP1-201ENST00000423438 492 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 XKRYP2-201ENST00000432915 492 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 TRGVB-201ENST00000453257 471 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 ANKRD26P4-201ENST00000455755 950 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AC026801.1-201ENST00000497178 464 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AC004062.1-201ENST00000509926 645 ntBASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC1.45□□□□□ -2.18
CCDC88BA6NC98 AL356432.1-201ENST00000405809 419 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms