Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Trim54Q9ERP3 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Gm10060-201ENSMUST00000212002 111 ntBASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim54Q9ERP3 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.52■□□□□ 0.4
Trim54Q9ERP3 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim54Q9ERP3 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Trim54Q9ERP3 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim54Q9ERP3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim54Q9ERP3 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim54Q9ERP3 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms