Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.28
RTRAFQ9CQE8 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC13.27□□□□□ -0.29
RTRAFQ9CQE8 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Gm2011-201ENSMUST00000203124 1263 ntBASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RTRAFQ9CQE8 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Wnt10b-205ENSMUST00000226846 1204 ntBASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
RTRAFQ9CQE8 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 AC099934.2-201ENSMUST00000196389 70 ntBASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 AC156953.1-201ENSMUST00000196953 70 ntBASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 AC157822.2-201ENSMUST00000200291 70 ntBASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Gm44616-201ENSMUST00000206417 1732 ntBASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RTRAFQ9CQE8 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms