Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Lig3P97386 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Lig3P97386 Gm12895-201ENSMUST00000122214 226 ntBASIC17.69■□□□□ 0.42
Lig3P97386 Gm11452-201ENSMUST00000122376 690 ntBASIC17.69■□□□□ 0.42
Lig3P97386 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.69■□□□□ 0.42
Lig3P97386 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Mir8112-201ENSMUST00000184382 131 ntBASIC17.69■□□□□ 0.42
Lig3P97386 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
Lig3P97386 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Lig3P97386 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lig3P97386 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Gm15794-201ENSMUST00000120182 631 ntBASIC17.68■□□□□ 0.42
Lig3P97386 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.68■□□□□ 0.42
Lig3P97386 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lig3P97386 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.68■□□□□ 0.42
Lig3P97386 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Lig3P97386 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Lig3P97386 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.67■□□□□ 0.42
Lig3P97386 Gm10052-201ENSMUST00000168019 960 ntBASIC17.67■□□□□ 0.42
Lig3P97386 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.67■□□□□ 0.42
Lig3P97386 Gm7729-201ENSMUST00000050143 801 ntBASIC17.67■□□□□ 0.42
Lig3P97386 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Lig3P97386 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.67■□□□□ 0.42
Lig3P97386 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.67■□□□□ 0.42
Lig3P97386 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lig3P97386 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.66■□□□□ 0.42
Lig3P97386 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.66■□□□□ 0.42
Lig3P97386 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.66■□□□□ 0.42
Lig3P97386 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.66■□□□□ 0.42
Lig3P97386 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Lig3P97386 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Lig3P97386 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Lig3P97386 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lig3P97386 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Lig3P97386 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Lig3P97386 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.65■□□□□ 0.42
Lig3P97386 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.65■□□□□ 0.42
Lig3P97386 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lig3P97386 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms