Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
Cdx1P18111 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Cdx1P18111 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Cdx1P18111 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx1P18111 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Cdx1P18111 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx1P18111 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Cdx1P18111 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Cdx1P18111 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC13.15□□□□□ -0.3
Cdx1P18111 Gm11643-201ENSMUST00000119578 864 ntBASIC13.15□□□□□ -0.3
Cdx1P18111 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC13.15□□□□□ -0.3
Cdx1P18111 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC13.15□□□□□ -0.3
Cdx1P18111 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC13.15□□□□□ -0.3
Cdx1P18111 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
Cdx1P18111 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cdx1P18111 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx1P18111 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC13.15□□□□□ -0.31
Cdx1P18111 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx1P18111 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx1P18111 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cdx1P18111 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Cdx1P18111 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Cdx1P18111 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
Cdx1P18111 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Cdx1P18111 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx1P18111 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Alkbh1-212ENSMUST00000185301 408 ntBASIC13.14□□□□□ -0.31
Cdx1P18111 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC13.14□□□□□ -0.31
Cdx1P18111 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx1P18111 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx1P18111 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.13□□□□□ -0.31
Cdx1P18111 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC13.13□□□□□ -0.31
Cdx1P18111 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC13.13□□□□□ -0.31
Cdx1P18111 Gm15565-201ENSMUST00000118890 427 ntBASIC13.13□□□□□ -0.31
Cdx1P18111 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Cdx1P18111 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx1P18111 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms