Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 AC069562.2-201ENSMUST00000224644 2146 ntBASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Chmp6P0C0A3 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Gm17808-201ENSMUST00000200859 894 ntBASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Gm18421-201ENSMUST00000204122 625 ntBASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Chmp6P0C0A3 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Gm29518-201ENSMUST00000190858 372 ntBASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Gm44450-201ENSMUST00000199528 114 ntBASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Chmp6P0C0A3 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Chmp6P0C0A3 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms