Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC022447.4-201ENST00000504053 364 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 RN7SKP82-201ENST00000516786 223 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 SETP2-201ENST00000553886 926 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AL360157.1-201ENST00000565962 87 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 RPL23AP97-201ENST00000568955 471 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 HNRNPCP4-201ENST00000571636 900 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 HMGB1P50-201ENST00000605814 607 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 Mico1.1-201ENST00000611698 204 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC100827.5-201ENST00000615883 426 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 MIR6864-201ENST00000617935 70 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 U6.104-201ENST00000637979 90 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 AC009902.3-201ENST00000606235 2172 ntBASIC5.01□□□□□ -1.61
CCDC39Q9UFE4 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 RNU6-511P-201ENST00000363496 107 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 RNU6-886P-201ENST00000384319 105 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 MIR19A-201ENST00000384878 82 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 SNORA74C-2-201ENST00000411179 201 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 ELOCP20-201ENST00000422460 345 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 RBMY1KP-201ENST00000423480 476 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 RPL7P46-201ENST00000425129 740 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC234779.1-201ENST00000425910 285 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC099799.1-201ENST00000439809 192 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 RPL21P89-201ENST00000444021 467 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC104472.2-201ENST00000469035 601 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC231760.1-201ENST00000498002 260 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 RNU2-10P-201ENST00000516375 211 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 RNU6-255P-201ENST00000516957 105 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 IGLVIV-53-201ENST00000520107 367 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC020914.4-201ENST00000597690 277 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC009779.6-201ENST00000603972 165 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AL445363.3-201ENST00000623080 671 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AC025034.2-201ENST00000623264 286 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 AP000843.1-201ENST00000624880 701 ntBASIC5□□□□□ -1.61
CCDC39Q9UFE4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC39Q9UFE4 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5□□□□□ -1.61
CCDC39Q9UFE4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC39Q9UFE4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC39Q9UFE4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.29-201ENST00000362570 113 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.64-201ENST00000362845 102 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-1287P-201ENST00000362914 107 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-1159P-201ENST00000362933 107 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-97P-201ENST00000363387 104 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.234-201ENST00000364409 97 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-806P-201ENST00000365147 105 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-1060P-201ENST00000384664 107 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 Y_RNA.576-201ENST00000384781 102 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 MIR649-201ENST00000384843 97 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 DSTNP4-201ENST00000399472 474 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC110754.1-201ENST00000399740 601 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU4-46P-201ENST00000410818 138 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RNU6-55P-201ENST00000411092 107 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AP000275.1-201ENST00000411943 390 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RPS20P14-201ENST00000412545 360 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC011933.1-201ENST00000413334 321 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RPL31P45-201ENST00000419532 356 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AL139095.3-201ENST00000419672 1203 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AL590233.1-201ENST00000430017 456 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 ABCF2P2-201ENST00000450549 296 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC108059.3-201ENST00000456388 214 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 SCARNA18-201ENST00000459004 134 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 RN7SL585P-201ENST00000470538 280 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 HMGB1P21-201ENST00000502313 581 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC025554.1-201ENST00000505641 188 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 SOD1P3-201ENST00000518682 454 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AP006289.1-201ENST00000538089 277 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 MIR548AI-201ENST00000579940 88 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC024619.4-201ENST00000580924 316 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC011494.1-201ENST00000596454 237 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AL160290.3-201ENST00000604869 165 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC004792.1-201ENST00000614523 137 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 AC027287.1-201ENST00000553115 1453 ntBASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC39Q9UFE4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms