Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 RPL21P12-201ENST00000559810 515 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 SNORA59B-202ENST00000578183 701 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 AC012507.3-201ENST00000603556 477 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 AC004908.2-201ENST00000609090 574 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 TUG1_1.1-201ENST00000610654 145 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 AL591516.1-201ENST00000611326 274 ntBASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
SMARCAL1Q9NZC9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU5E-8P-201ENST00000363502 116 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-1085P-201ENST00000363576 107 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.390-201ENST00000383932 102 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.402-201ENST00000383972 102 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-483P-201ENST00000384088 108 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-39P-201ENST00000384344 107 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 MIR490-201ENST00000384865 128 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-278P-201ENST00000390945 109 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-837P-201ENST00000391056 108 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.604-201ENST00000410574 102 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 SSXP9-201ENST00000417503 292 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC093156.1-201ENST00000440382 670 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 UQCRHP3-201ENST00000451503 251 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 CYCSP35-201ENST00000451978 304 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 MTND2P24-201ENST00000453434 806 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC234775.1-201ENST00000454247 670 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC108059.3-201ENST00000456388 214 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU7-59P-201ENST00000459101 61 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 MTCO2P29-201ENST00000465212 189 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC079382.1-201ENST00000493346 557 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-1178P-201ENST00000516674 107 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 DEFB108D-201ENST00000527787 222 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC068135.2-201ENST00000569293 1028 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC025449.1-201ENST00000603896 529 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AP002360.4-201ENST00000606980 481 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC103710.2-201ENST00000609912 942 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC017083.3-201ENST00000609955 700 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC099778.2-201ENST00000610904 211 ntBASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SMARCAL1Q9NZC9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RNY4P14-201ENST00000363656 96 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-637P-201ENST00000384050 107 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RNU6-432P-201ENST00000384196 109 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MIR1-2-201ENST00000384961 85 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MIR449B-201ENST00000384995 97 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MIR1277-201ENST00000408536 78 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RNU2-9P-201ENST00000410194 145 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RN7SKP111-201ENST00000410349 271 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MTATP6P18-201ENST00000417994 673 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 BEND7P1-201ENST00000422058 457 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MTCO1P20-201ENST00000425366 358 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 HMGN2P20-201ENST00000437531 273 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AC009969.1-201ENST00000438726 172 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RPS12P18-201ENST00000442381 270 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AL049714.1-201ENST00000466686 347 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RN7SL293P-201ENST00000481765 281 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RPL21P13-201ENST00000488305 481 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AC069439.1-201ENST00000494739 167 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 APOOP4-201ENST00000513530 597 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 Y_RNA.693-201ENST00000516641 110 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AL163153.1-201ENST00000554223 283 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 MTCO3P24-201ENST00000572729 782 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.34□□□□□ -1.87
SMARCAL1Q9NZC9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms