Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4□□□□□ -1.77
TDP1Q9NUW8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 OR4G2P-202ENST00000641004 1759 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 RNU6-288P-201ENST00000363690 104 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.529-201ENST00000384586 119 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 MIR7-3-201ENST00000384898 110 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 MIR514A1-201ENST00000385133 98 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 RNU6-510P-201ENST00000391239 108 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL592114.1-201ENST00000403842 483 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL356432.1-201ENST00000405809 419 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL353678.1-201ENST00000422735 741 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 MTND4P28-201ENST00000426217 387 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC091286.1-201ENST00000431233 461 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4□□□□□ -1.77
TDP1Q9NUW8 TAAR7P-201ENST00000436141 242 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 UBE2CP3-201ENST00000502715 450 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 HMGN1P11-201ENST00000508668 303 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 TTC39CP1-201ENST00000512513 755 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4□□□□□ -1.77
TDP1Q9NUW8 AC022690.1-201ENST00000526681 550 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4□□□□□ -1.77
TDP1Q9NUW8 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4□□□□□ -1.77
TDP1Q9NUW8 MIR5187-201ENST00000583479 76 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4□□□□□ -1.77
TDP1Q9NUW8 VN1R80P-201ENST00000597126 338 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 AC021646.1-201ENST00000605469 484 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4□□□□□ -1.77
TDP1Q9NUW8 AL359547.2-201ENST00000615810 418 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 DLEU1_1.1-201ENST00000618107 190 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL773545.4-201ENST00000637262 310 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AC112487.2-201ENST00000637950 304 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 AL513478.4-201ENST00000641636 310 ntBASIC4□□□□□ -1.77
TDP1Q9NUW8 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4□□□□□ -1.77
TDP1Q9NUW8 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4□□□□□ -1.77
TDP1Q9NUW8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
TDP1Q9NUW8 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.100-201ENST00000363141 102 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 SNORA70.4-201ENST00000365509 134 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.373-201ENST00000365600 103 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.378-201ENST00000365652 113 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 MIR513A2-201ENST00000385249 127 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 MIR199A2-201ENST00000385289 110 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 CISD1P1-201ENST00000393907 327 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 LAP3P1-201ENST00000403648 294 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 RN7SKP32-201ENST00000410167 303 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AL513331.1-201ENST00000411908 397 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 CRYBB2P1-203ENST00000415709 538 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 ARL5AP1-201ENST00000418991 388 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 IFNA20P-201ENST00000436840 528 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 RNU6-953P-201ENST00000459154 107 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 RNU4-49P-201ENST00000516080 140 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC022695.1-201ENST00000522089 237 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC090281.1-201ENST00000523019 276 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC135001.1-201ENST00000544546 283 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 RPS3AP23-202ENST00000574601 686 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AL138889.2-201ENST00000603883 242 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC092807.2-201ENST00000609367 243 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC009233.1-201ENST00000616477 371 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AL591424.2-201ENST00000617023 128 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 AC009093.8-201ENST00000641769 292 ntBASIC3.99□□□□□ -1.77
TDP1Q9NUW8 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
TDP1Q9NUW8 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.11-201ENST00000362375 109 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 U3.12-201ENST00000364498 214 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 RNU6-1127P-201ENST00000384580 107 ntBASIC3.98□□□□□ -1.77
TDP1Q9NUW8 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.98□□□□□ -1.77
TDP1Q9NUW8 RN7SKP177-201ENST00000410567 355 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms