Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC123904.2-201ENST00000548059 300 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 U73023.1-201ENST00000603134 700 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 YPEL5P2-201ENST00000605553 359 ntBASIC2.78□□□□□ -1.96
DDX28Q9NUL7 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
DDX28Q9NUL7 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
DDX28Q9NUL7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.78□□□□□ -1.97
DDX28Q9NUL7 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 RNU6-553P-201ENST00000364047 96 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 Y_RNA.560-201ENST00000384689 102 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 MIR181B1-201ENST00000385240 110 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 SNORD115.1-201ENST00000391109 76 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AL031577.2-201ENST00000404133 280 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 RNU6-920P-201ENST00000410926 92 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC107081.1-201ENST00000414975 361 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC063979.1-201ENST00000415539 377 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 MTATP6P30-201ENST00000443540 664 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 ZNF114P1-201ENST00000453500 292 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 ART2BP-201ENST00000453501 499 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AL139824.2-201ENST00000458731 1095 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC087588.1-201ENST00000462203 316 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 RN7SKP258-201ENST00000517151 304 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 SNORA31.21-201ENST00000517180 77 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC006504.3-201ENST00000586818 523 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC136601.2-201ENST00000604356 474 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC008277.2-201ENST00000605196 797 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 MIR7112-201ENST00000616126 65 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.77□□□□□ -1.97
DDX28Q9NUL7 AC026241.1-201ENST00000517873 2142 ntBASIC2.77□□□□□ -1.97
DDX28Q9NUL7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL355596.1-201ENST00000565399 3996 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RNU5F-6P-201ENST00000362979 116 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RNU6-533P-201ENST00000384144 107 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RNU6-140P-201ENST00000384566 108 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL049545.1-201ENST00000401856 572 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RNU2-62P-201ENST00000410868 191 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 ZNF863P-201ENST00000426746 417 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RPL7P34-201ENST00000433316 712 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 ARPC3P1-201ENST00000437218 533 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC016696.1-201ENST00000446949 318 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC119751.5-201ENST00000514077 770 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC025881.1-201ENST00000518851 512 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 ELOCP31-201ENST00000540463 467 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC145350.1-201ENST00000567426 208 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC068135.2-201ENST00000569293 1028 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 MIR4513-201ENST00000581077 86 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 MIR4325-201ENST00000583049 90 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 WISP1-OT1-201ENST00000602893 642 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AP001981.2-201ENST00000603241 418 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC121334.2-201ENST00000605387 271 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 FTX_3.1-201ENST00000610451 147 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC100793.4-201ENST00000613683 429 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC004852.3-201ENST00000614131 326 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AL603755.1-201ENST00000619504 163 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 AC010149.2-201ENST00000637608 315 ntBASIC2.76□□□□□ -1.97
DDX28Q9NUL7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
DDX28Q9NUL7 PABPC1P9-201ENST00000426076 1612 ntBASIC2.75□□□□□ -1.97
DDX28Q9NUL7 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.75□□□□□ -1.97
DDX28Q9NUL7 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms